<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23886

Description Uncharacterized protein
SequenceQVLPSPSLITGTHGPFKDSALSNFLFIRWLLLSRDARPAPFASQNPRPHSTPMATPEVVASDGANPQHEPSRAEEAAPVAEPGEASDLGAVAAAPAVEEVAAGDAPPATTPTSTSTSSAAVLPPPASPASAAAPGPRPPRPQFAGSPAYMAPPASSPAPAFSYNVLPRAPPPQHMGSGLAHQQLASAPAPMARPMPPAALQPPAPRQYFGNRPSFSYNVVSHANASLPTGQQFQLDTRTNHAVQVPMFAPPASLQPPAPGQLPRLGAPFPGPMAPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQDFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIIPTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEREVEQAAKAKVDEQAKLREKGNAKLAKGKKGKSRKWRE
Length941
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.06
Grand average of hydropathy-0.709
Instability index56.38
Isoelectric point8.85
Molecular weight100227.58
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23886
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     162.83|      27|      28|     120|     146|       1
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  120-  146 (56.01/18.38)	AVLPPP.AS.PASAAAPG..PRPPRPQFAGS
  148-  177 (37.10/ 9.33)	AYMAPP.ASsPAPAFSYNvlPRAPPPQHMGS
  185-  211 (37.45/ 9.49)	ASAPAPmAR.PMPPAALQ..PPAPR.QYFGN
  314-  337 (32.26/ 7.01)	APSAPE.VS.PHTVQSL.....PPRPEGFGA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     338.46|      51|      51|     341|     391|       2
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  341-  391 (96.38/36.48)	SAPGQRPSNL.STPPSL..LQRPTG...........PAP..SLP..QT.SPSGAAPGA...VPRA..TQQ..Q...FYPS
  394-  429 (42.76/11.87)	SAPGNPPQPLwGYPPQ......PTG.........fqQAPfhSYP......P.....GS..................LGPL
  430-  461 (49.71/15.06)	GAPMVGTSSV.TT............................SLP..NI.QPPGITTGD....PK....EQ........PS
  466-  508 (39.36/10.30)	SVQ........SIHTSV..EQHPTG.................LE..DR.STAGVQDSD...TWSAhkTEA..GvlyYY..
  509-  561 (43.40/12.16)	........NA.LTGEST..YQRPPGykgelekvaaqPVP..A.S..WD.KIAGTDWSI...VTTS..DGK..K...YYYD
  562-  602 (33.57/ 7.65)	NK..QKVSSW.QLPPEVaeLNKNAD............SG..NLK..GS.STSLQDAGT...VAN................
  604-  653 (33.28/ 7.52)	...GEASGEI.STPA....IQ..TG...........GRD..SLPlrQTvAP..ASPSAldlIKKK..LQDagA...FSVS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.92|      15|      15|     659|     673|       4
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  659-  673 (24.78/12.71)	PSSSASELNGSKPAD
  676-  690 (23.91/11.98)	PKEQQGSKNGEKSKD
  701-  715 (24.23/12.24)	SSDSDDEEHGPSKED
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     282.68|      91|     129|     717|     811|       6
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  717-  811 (141.12/119.29)	IREFKKMLKE.RGVAPFSKWEKELPKIVFDSRFKAIpSHSTRRAIFDHFVR..............tRADEERKEKRAAQKAAVEAYKQLLEEASEGIdSKtGYQDFERKW
  814-  846 (25.81/10.73)	.............................DPRFAAL.DKKEREALFKEKVR................ALEE.KV.QSARNA.............................
  848-  939 (115.75/80.23)	ITDFKSMLREcKDIIPTSRWTKVKENFRSDPRYKAV...............kheerenafneyiaeLKSAEREVEQAA.KAKVDEQAKLREKGNAKL.AK.GKKGKSRKW
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     147.63|      31|     233|      38|      68|       7
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   38-   68 (61.71/25.82)	PAPF.....ASQNPR....PHSTPMATPEVVASDGANPQH
   76-  107 (32.89/10.00)	AAPVaepgeASDLGA....VAAAP.AVEEVAAGD.APP..
  270-  302 (53.03/21.06)	PGPM.....APNPPAsirlPFPVPPRTPNILY..GANPQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23886 with Med35 domain of Kingdom Viridiplantae
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