<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23886

Description Uncharacterized protein
SequenceQVLPSPSLITGTHGPFKDSALSNFLFIRWLLLSRDARPAPFASQNPRPHSTPMATPEVVASDGANPQHEPSRAEEAAPVAEPGEASDLGAVAAAPAVEEVAAGDAPPATTPTSTSTSSAAVLPPPASPASAAAPGPRPPRPQFAGSPAYMAPPASSPAPAFSYNVLPRAPPPQHMGSGLAHQQLASAPAPMARPMPPAALQPPAPRQYFGNRPSFSYNVVSHANASLPTGQQFQLDTRTNHAVQVPMFAPPASLQPPAPGQLPRLGAPFPGPMAPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQDFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIIPTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEREVEQAAKAKVDEQAKLREKGNAKLAKGKKGKSRKWRE
Length941
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.06
Grand average of hydropathy-0.709
Instability index56.38
Isoelectric point8.85
Molecular weight100227.58
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23886
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     162.83|      27|      28|     120|     146|       1
---------------------------------------------------------------------------
  120-  146 (56.01/18.38)	AVLPPP.AS.PASAAAPG..PRPPRPQFAGS
  148-  177 (37.10/ 9.33)	AYMAPP.ASsPAPAFSYNvlPRAPPPQHMGS
  185-  211 (37.45/ 9.49)	ASAPAPmAR.PMPPAALQ..PPAPR.QYFGN
  314-  337 (32.26/ 7.01)	APSAPE.VS.PHTVQSL.....PPRPEGFGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     338.46|      51|      51|     341|     391|       2
---------------------------------------------------------------------------
  341-  391 (96.38/36.48)	SAPGQRPSNL.STPPSL..LQRPTG...........PAP..SLP..QT.SPSGAAPGA...VPRA..TQQ..Q...FYPS
  394-  429 (42.76/11.87)	SAPGNPPQPLwGYPPQ......PTG.........fqQAPfhSYP......P.....GS..................LGPL
  430-  461 (49.71/15.06)	GAPMVGTSSV.TT............................SLP..NI.QPPGITTGD....PK....EQ........PS
  466-  508 (39.36/10.30)	SVQ........SIHTSV..EQHPTG.................LE..DR.STAGVQDSD...TWSAhkTEA..GvlyYY..
  509-  561 (43.40/12.16)	........NA.LTGEST..YQRPPGykgelekvaaqPVP..A.S..WD.KIAGTDWSI...VTTS..DGK..K...YYYD
  562-  602 (33.57/ 7.65)	NK..QKVSSW.QLPPEVaeLNKNAD............SG..NLK..GS.STSLQDAGT...VAN................
  604-  653 (33.28/ 7.52)	...GEASGEI.STPA....IQ..TG...........GRD..SLPlrQTvAP..ASPSAldlIKKK..LQDagA...FSVS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.92|      15|      15|     659|     673|       4
---------------------------------------------------------------------------
  659-  673 (24.78/12.71)	PSSSASELNGSKPAD
  676-  690 (23.91/11.98)	PKEQQGSKNGEKSKD
  701-  715 (24.23/12.24)	SSDSDDEEHGPSKED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     282.68|      91|     129|     717|     811|       6
---------------------------------------------------------------------------
  717-  811 (141.12/119.29)	IREFKKMLKE.RGVAPFSKWEKELPKIVFDSRFKAIpSHSTRRAIFDHFVR..............tRADEERKEKRAAQKAAVEAYKQLLEEASEGIdSKtGYQDFERKW
  814-  846 (25.81/10.73)	.............................DPRFAAL.DKKEREALFKEKVR................ALEE.KV.QSARNA.............................
  848-  939 (115.75/80.23)	ITDFKSMLREcKDIIPTSRWTKVKENFRSDPRYKAV...............kheerenafneyiaeLKSAEREVEQAA.KAKVDEQAKLREKGNAKL.AK.GKKGKSRKW
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     147.63|      31|     233|      38|      68|       7
---------------------------------------------------------------------------
   38-   68 (61.71/25.82)	PAPF.....ASQNPR....PHSTPMATPEVVASDGANPQH
   76-  107 (32.89/10.00)	AAPVaepgeASDLGA....VAAAP.AVEEVAAGD.APP..
  270-  302 (53.03/21.06)	PGPM.....APNPPAsirlPFPVPPRTPNILY..GANPQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23886 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKAKVDEQAKLREKGNAKLAKGKKGKSRKWRE
2) ASLPTGQQFQLDTRTNHAVQVPMFAPPASLQPPAPGQLPRLGAPFPGPMAPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTW
3) GAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREF
4) PAFSYNVLPRAPPPQHMGSGLAHQQLASAPAPMARPMPPAALQPPAPRQY
5) QLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIK
6) RPAPFASQNPRPHSTPMATPEVVASDGANPQHEPSRAEEAAPVAEPGEASDLGAVAAAPAVEEVAAGDAPPATTPTSTSTSSAAVLPPPASPASAAAPGPRPPRPQFAGSPAYMAPPASSP
910
225
648
159
570
37
941
495
720
208
641
157










Molecular Recognition Features






MoRF SequenceStartStop




1) AKAKVDEQAKLREKGNAKLAKGKKGKSRKWRE
2) FLFIRWLLL
3) GKKYYYD
4) LIKKKL
910
24
555
639
941
32
561
644