<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23884

Description Uncharacterized protein
SequenceMPMLACLLRTNHAVQVPMFAPPASLQPPAPGQLPRLGAPFPGPMAPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQDFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIIPTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEREVEQAAKAKVDEQAKLREKGNAKLAKGKKGKSRKWRE
Length712
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.06
Grand average of hydropathy-0.812
Instability index51.90
Isoelectric point8.98
Molecular weight76909.00
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23884
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     140.44|      26|      26|     132|     157|       1
---------------------------------------------------------------------------
   38-   62 (39.51/13.50)	AP.F....PG.PMAPNPPASIRLP..FPVPPRT
  129-  155 (43.47/15.61)	QRpT...GPA.PSLPQTSPSGAAP..GAVPRAT
  156-  182 (30.39/ 8.65)	QQqF...YPSyPSAPGNPPQ...PlwGYPPQPT
  230-  257 (27.08/ 6.89)	QP.SvnpGSV.QSI.HTSVEQHPT..GLEDRST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.85|      15|      15|     430|     444|       2
---------------------------------------------------------------------------
  430-  444 (24.95/12.25)	PSSSASELNGSKPAD
  447-  461 (22.12/10.03)	PKEQQGSKNGEKSKD
  472-  486 (22.77/10.53)	SSDSDDEEHGPSKED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      80.03|      14|      14|     579|     592|       3
---------------------------------------------------------------------------
  527-  542 (16.10/ 7.49)	TRRAIFDHfvRTRADE
  579-  592 (23.26/14.20)	ERKWGADP..RFAALD
  595-  608 (21.56/12.61)	EREALFKE..KVRALE
  658-  671 (19.11/10.31)	ERENAFNE..YIAELK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     169.93|      50|      51|     266|     316|       4
---------------------------------------------------------------------------
  266-  316 (88.96/50.69)	WSAHKTEAGVLYYYNALTGESTYQRPPGYkGELEKVA.AQPVPASWDKI..AGT
  318-  370 (80.97/42.21)	WSIVTTSDGKKYYYDNKQKVSSWQLPPEV.AELNKNAdSGNLKGSSTSLqdAGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.09|      37|     129|     488|     525|       5
---------------------------------------------------------------------------
  488-  525 (62.62/44.94)	IREFKKMLKE.RGVAPFSKWEKELPKIVFDSRFKAIpSH
  619-  656 (63.48/40.31)	ITDFKSMLREcKDIIPTSRWTKVKENFRSDPRYKAV.KH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.52|      31|      93|      97|     127|       6
---------------------------------------------------------------------------
   15-   37 (30.43/ 8.50)	.....QVP..MFAPPAS.............lQ..PPAPGQLPRLG
   68-  110 (41.53/14.12)	GANPQQ..GNLDVGASKsdapsapevsphtvQSLPPRPEGFGAVG
  207-  228 (26.56/ 6.55)	TSSVTTSLPNIQ.PPGI..............TTGDPK........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.94|      15|      18|     679|     693|       7
---------------------------------------------------------------------------
  679-  693 (23.64/12.63)	QAAKAKVDEQAKLRE
  698-  712 (26.30/14.78)	KLAKGKKGKSRKWRE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23884 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKAKVDEQAKLREKGNAKLAKGKKGKSRKWRE
2) GAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREF
3) QLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIK
4) VPMFAPPASLQPPAPGQLPRLGAPFPGPMAPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTW
681
419
341
16
712
491
412
266










Molecular Recognition Features






MoRF SequenceStartStop




1) DGKKYYYD
2) LIKKKL
3) VDEQAKLREKGNAKLAKGKKGKSRKWRE
325
410
685
332
415
712