<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23883

Description Uncharacterized protein
SequenceLLSRDARPAPFASQNPRPHSTPMATPEVVASDGANPQHEPSRAEEAAPVAEPGEASDLGAVAAAPAVEEVAAGDAPPATTPTSTSTSSAAVLPPPASPASAAAPGPRPPRPQFAGSPAYMAPPASSPAPAFSYNVLPRAPPPQHMGSGLAHQQLASAPAPMARPMPPAALQPPAPRQYFGNRPSFSYNVVSHANASLPTGQQFQLDTRTNHAVQVPMFAPPASLQPPAPGQLPRLGAPFPGPMAPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQDFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIIPTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEREVEQAAKAKVDEQVCQLS
Length892
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.06
Grand average of hydropathy-0.701
Instability index57.46
Isoelectric point6.64
Molecular weight94683.14
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23883
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     164.88|      27|      28|      90|     116|       1
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   90-  116 (55.47/15.06)	AVLPPP.AS.PASAAAPG..PRPPRPQFAGS
  118-  147 (37.83/ 7.92)	AYMAPP.ASsPAPAFSYNvlPRAPPPQHMGS
  155-  181 (37.95/ 7.97)	ASAPAPmAR.PMPPAALQ..PPAPR.QYFGN
  284-  307 (33.63/ 6.22)	APSAPE.VS.PHTVQSL.....PPRPEGFGA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     371.12|      51|      51|     311|     361|       2
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   52-   89 (36.04/ 8.29)	PGE.ASDLgavAAAPAVEEVAAG...........DAP.............PATTPTS..T.........S..tsSA
  183-  219 (44.87/12.33)	PSFSYNVV...SHANASL..PTG...........QQF..QL.........DTRTNHA..VQ......VPM....FA
  220-  256 (48.88/14.16)	P...PASL...QPP......APG...........QLP..RLGAPFPGPMAPN..PPA..SIRL...PFP.......
  313-  365 (91.42/33.60)	PGQRPSNL...STPPSLLQRPTG...........PAP..SLPQTSPSGAAPGAVPRA..TQQQ...FYPS..ypSA
  366-  401 (41.07/10.59)	PGNPPQPL..wGYPPQ....PTG.........fqQAPfhSYP...P.....GS.............LGPL....GA
  402-  437 (39.78/10.00)	PMVGTSSV...TT..........................SLPNIQPPGITTGD.PK....EQ......PSvnpgSV
  438-  478 (32.19/ 6.54)	Q..........SIHTSVEQHPTG.................LEDRSTAGVQDSDTWSAhkTEAGvlyYY........
  479-  533 (36.87/ 8.68)	......NA...LTGESTYQRPPGykgelekvaaqPVP..A.SWDKIAGTDWSIVTTS..DGKK...YYYD....NK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      86.18|      15|      15|     629|     643|       3
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  602-  616 (18.40/ 6.65)	ASPSALDLIKKKLQD
  629-  643 (26.65/13.04)	PSSSASELNGSKPAD
  646-  660 (20.26/ 8.09)	PKEQQGSKNGEKSKD
  671-  685 (20.87/ 8.57)	SSDSDDEEHGPSKED
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      88.59|      16|      16|     714|     729|       4
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  714-  729 (28.22/18.63)	FDS..RFKAIPSH..STRRA
  731-  748 (22.36/13.09)	FDHfvRTRADEER..KEKRA
  784-  797 (19.56/10.45)	.DP..RFAAL.DK..KEREA
  799-  816 (18.46/ 9.41)	FKE..KVRALEEKvqSARNA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.92|      21|     129|     687|     707|       5
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  687-  707 (39.66/27.86)	IREFKKMLKE.RGVAPFSKWEK
  818-  839 (35.25/23.94)	ITDFKSMLREcKDIIPTSRWTK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.09|      17|     233|      22|      38|       6
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    6-   20 (21.70/ 8.01)	..ARPAPFASQNPRPHS
   22-   38 (32.91/16.98)	PMATPEVVASDGANPQH
  258-  271 (23.48/ 9.43)	PPRTPNILY..GANPQ.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23883 with Med35 domain of Kingdom Viridiplantae
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