<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23882

Description Uncharacterized protein
SequenceMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGILFTGADGLEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQDFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIIPTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEREVEQAAKAKVDEQAKLREKGNAKLAKGKKGKSRKWRE
Length517
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.939
Instability index39.64
Isoelectric point8.40
Molecular weight56920.50
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23882
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.97|      44|      49|      57|     105|       1
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   61-  105 (76.85/62.64)	STAGVQDS.D.....TWSAHKTEAGVLYYYNALTGESTYQRPPGYkGELEK
  107-  156 (71.11/43.54)	AAQPVPASwDkiagtDWSIVTTSDGKKYYYDNKQKVSSWQLPPEV.AELNK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      89.13|      16|      16|     320|     335|       2
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  320-  335 (27.54/15.27)	FDS..RFKAIPSH..STRRA
  337-  354 (22.81/11.45)	FDHfvRTRADEER..KEKRA
  390-  403 (19.21/ 8.54)	.DP..RFAAL.DK..KEREA
  405-  422 (19.57/ 8.83)	FKE..KVRALEEKvqSARNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.92|      21|     129|     293|     313|       3
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  293-  313 (39.66/27.03)	IREFKKMLKE.RGVAPFSKWEK
  424-  445 (35.25/23.23)	ITDFKSMLREcKDIIPTSRWTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.86|      29|      49|     170|     203|       4
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  170-  189 (26.93/12.28)	..............................LQ.DAGTVANKGEASGEISTP
  190-  235 (26.53/25.89)	AIQTGGrdSLPlrqtvapaspsaldlikkkLQ.DAGAFS....VSSPLATP
  239-  264 (32.40/18.37)	ASELNG..SKP.....................aDGAPKEQQGSKNGEKS..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.43|      31|     127|     355|     387|       6
---------------------------------------------------------------------------
  355-  387 (44.21/31.35)	AQKAAVEAYKQLLEEASEGIdSKtGYQDFERKW
  485-  515 (51.22/27.68)	AAKAKVDEQAKLREKGNAKL.AK.GKKGKSRKW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23882 with Med35 domain of Kingdom Viridiplantae
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