<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23881

Description Uncharacterized protein
SequenceMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQDFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIIPTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEREVEQAAKAKVDEQAKLREKGNAKLAKGKKGKSRKWRE
Length509
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.06
Grand average of hydropathy-0.970
Instability index40.40
Isoelectric point8.58
Molecular weight56145.64
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23881
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.64|      42|      49|      49|      97|       1
---------------------------------------------------------------------------
   49-   97 (56.44/49.54)	LeDRsTAGvqdSDtWSAHKTEAGVLYYYNALTGESTYQRPPGYkGELEK
  107-  148 (79.20/42.42)	W.DK.IAG...TD.WSIVTTSDGKKYYYDNKQKVSSWQLPPEV.AELNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.94|      16|      16|     312|     327|       2
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  313-  329 (23.48/10.91)	DSRFKAIPSHSTR.RAiF
  382-  397 (22.30/10.03)	DPRFAAL.DKKER.EAlF
  445-  460 (23.16/10.67)	DPRYKAVK.HEEReNA.F
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.20|      32|     129|     274|     305|       3
---------------------------------------------------------------------------
  274-  305 (56.15/37.95)	DEEHGPSKEDCIREFKKMLKE..RGVAPFS.......KWEK
  341-  379 (28.52/15.60)	RKEKRAAQKAAVEAYKQLLEEasEGIDSKTgyqdferKW..
  405-  437 (47.54/30.99)	EEKVQSARNAVITDFKSMLRE.cKDIIPTS.......RWTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.86|      29|      49|     162|     195|       4
---------------------------------------------------------------------------
  162-  181 (26.93/10.42)	..............................LQ.DAGTVANKGEASGEISTP
  182-  227 (26.53/22.05)	AIQTGGrdSLPlrqtvapaspsaldlikkkLQ.DAGAFS....VSSPLATP
  231-  256 (32.40/15.62)	ASELNG..SKP.....................aDGAPKEQQGSKNGEKS..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.94|      15|      16|     476|     490|       5
---------------------------------------------------------------------------
  476-  490 (23.64/11.71)	QAAKAKVDEQAKLRE
  495-  509 (26.30/13.77)	KLAKGKKGKSRKWRE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23881 with Med35 domain of Kingdom Viridiplantae
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