<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23880

Description Uncharacterized protein
SequenceMPMLACLLRTNHAVQVPMFAPPASLQPPAPGQLPRLGAPFPGPMAPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQDFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIIPTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEREVEQAAKAKVDEQVCQLS
Length693
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.06
Grand average of hydropathy-0.760
Instability index53.26
Isoelectric point7.16
Molecular weight74689.39
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23880
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     140.44|      26|      26|     132|     157|       1
---------------------------------------------------------------------------
   38-   62 (39.51/12.15)	AP.F....PG.PMAPNPPASIRLP..FPVPPRT
  129-  155 (43.47/14.09)	QRpT...GPA.PSLPQTSPSGAAP..GAVPRAT
  156-  182 (30.39/ 7.69)	QQqF...YPSyPSAPGNPPQ...PlwGYPPQPT
  230-  257 (27.08/ 6.08)	QP.SvnpGSV.QSI.HTSVEQHPT..GLEDRST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     121.39|      34|      49|     266|     302|       2
---------------------------------------------------------------------------
  266-  293 (48.52/30.90)	........................WSAHKTEAGVLYYYNA....LTGESTYQRPPG
  294-  345 (48.59/40.07)	YkGELEKvaaqpvpaswdkiagtdWSIVTTSDGKKYYYDN....KQKVSSWQLPPE
  346-  369 (24.28/11.88)	V.AELNK...............................NAdsgnLKGSSTSLQDAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.85|      15|      15|     430|     444|       3
---------------------------------------------------------------------------
  430-  444 (24.95/12.25)	PSSSASELNGSKPAD
  447-  461 (22.12/10.01)	PKEQQGSKNGEKSKD
  472-  486 (22.77/10.52)	SSDSDDEEHGPSKED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     277.66|      65|      66|     550|     614|       4
---------------------------------------------------------------------------
  491-  557 (84.54/61.97)	FKKMLKE..RGVAPFSKWEKELPKIVFDSRFKAIpSHSTRRAIFDHfvRTRAD...EER.KEKraAQKAAVEA
  558-  621 (94.07/69.90)	YKQLLEEASEGIDSKTGYQDFERKWGADPRFAAL.DKKEREALFKE..KVRAL...EEKVQSArnA...VITD
  622-  688 (99.05/74.04)	FKSMLRECKDIIPT.SRWTKVKENFRSDPRYKAV.KHEERENAFNE..YIAELksaEREVEQA..AKAKVDEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.52|      31|      93|      97|     127|       5
---------------------------------------------------------------------------
   15-   37 (30.43/11.58)	.....QVP..MFAPPAS.............lQ..PPAPGQLPRLG
   68-  110 (41.53/19.02)	GANPQQ..GNLDVGASKsdapsapevsphtvQSLPPRPEGFGAVG
  207-  228 (26.56/ 8.99)	TSSVTTSLPNIQ.PPGI..............TTGDPK........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.64|      21|      27|     370|     390|       6
---------------------------------------------------------------------------
  370-  390 (34.04/21.86)	TVANKGEASGEISTPAIQTGG
  399-  419 (31.60/19.66)	TVAPASPSALDLIKKKLQDAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23880 with Med35 domain of Kingdom Viridiplantae
Unable to open file!