<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23878

Description Uncharacterized protein
SequenceMARPMPPAALQPPAPRQYFGNRPSFSYNVVSHANASLPTGQQFQLDTRTNHAVQVPMFAPPASLQPPAPGQLPRLGAPFPGPMAPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGILFTGADGLEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQDFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIIPTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEREVEQAAKAKVDEQAKLREKGNAKLAKGKKGKSRKWRE
Length759
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.809
Instability index50.94
Isoelectric point9.06
Molecular weight81950.40
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23878
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.92|      15|      15|     477|     491|       1
---------------------------------------------------------------------------
  477-  491 (24.78/14.02)	PSSSASELNGSKPAD
  494-  508 (23.91/13.22)	PKEQQGSKNGEKSKD
  519-  533 (24.23/13.51)	SSDSDDEEHGPSKED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     374.23|      51|      51|     128|     178|       2
---------------------------------------------------------------------------
   39-   85 (42.23/13.57)	...TGQQFqLDTRTN...........HAVQVP...mfaPPA........................SlqP.............PAP..GQ...L..PR..LG...APFPGPMAP
   86-  126 (46.77/15.90)	N...PPAS.IRLPF............P...VP......PR.........................T..PNILYG..A....NPQ...QGnldV..GA..SK...SDAPS....
  128-  158 (45.45/15.22)	......................................PEV........................S..PHTVQS..L....PPRP..EG...F..GA..VG...GSAPGQRPS
  159-  211 (72.91/29.32)	NLSTPPSL.LQRPTG...........PAPSLP..qtspSGA........................A..PGAV..........PRAtqQQ...F..YP..SY...PSAPGNPPQ
  212-  254 (46.49/15.75)	PLWGYPP....QPTG.........fqQAP..........................................FHS..Y....PPGS..LG..pL..GApmVG...TSSVTTSLP
  255-  310 (43.63/14.28)	NIQ.PPGI....TTG...........D....P...keqPSV........................N..PGSVQS..IhtsvEQHP..TG.ilF.tGA..DGledRSTAGVQDS
  327-  411 (30.36/ 7.47)	NALTGEST.YQRPPGykgelekvaaqPVPA...........swdkiagtdwsivttsdgkkyyydN..KQKVSSwqL....PPEV..AE...LnkNA..DS...GNLKGSSTS
  427-  473 (46.39/15.70)	EISTPA...IQ..TG...........GRDSLPlrqtvaP.A........................S..PSALDL..I....KKKL..QD...A..GA..FS...VSSP.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.41|      14|      51|     313|     326|       3
---------------------------------------------------------------------------
  313-  326 (28.76/18.62)	WSAHKTEAGVLYYY
  365-  378 (28.65/18.52)	WSIVTTSDGKKYYY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      60.48|      17|      18|     561|     577|       4
---------------------------------------------------------------------------
  561-  574 (18.28/ 9.29)	...VFDS..RFKAIPS..HST
  575-  593 (23.90/14.71)	RRAIFDHfvRTRADEE..RKE
  643-  661 (18.30/ 9.31)	REALFKE..KVRALEEkvQSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.92|      21|     129|     535|     555|       5
---------------------------------------------------------------------------
  535-  555 (39.66/25.70)	IREFKKMLKE.RGVAPFSKWEK
  666-  687 (35.25/22.06)	ITDFKSMLREcKDIIPTSRWTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.43|      31|     127|     597|     629|       6
---------------------------------------------------------------------------
  597-  629 (44.21/44.89)	AQKAAVEAYKQLLEEASEGIdSKtGYQDFERKW
  727-  757 (51.22/39.72)	AAKAKVDEQAKLREKGNAKL.AK.GKKGKSRKW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.47|      11|      61|     632|     642|       7
---------------------------------------------------------------------------
  632-  642 (19.73/12.93)	DPRFAALDKKE
  695-  705 (20.74/13.98)	DPRYKAVKHEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23878 with Med35 domain of Kingdom Viridiplantae
Unable to open file!