<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23877

Description Uncharacterized protein
SequenceMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQDFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIIPTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEREVEQAAKAKVDEQVCQLS
Length490
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.903
Instability index41.87
Isoelectric point5.99
Molecular weight53926.02
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23877
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.64|      42|      49|      49|      97|       1
---------------------------------------------------------------------------
   49-   97 (56.44/62.09)	LeDRsTAGvqdSDtWSAHKTEAGVLYYYNALTGESTYQRPPGYkGELEK
  107-  148 (79.20/53.17)	W.DK.IAG...TD.WSIVTTSDGKKYYYDNKQKVSSWQLPPEV.AELNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.63|      30|      47|     162|     199|       2
---------------------------------------------------------------------------
  162-  199 (38.54/44.96)	LQDAGTVAnkgeASGEISTP...AIQTGGrdSLPlrQTVAP
  212-  244 (49.09/30.11)	LQDAGAFS....VSSPLATPsssASELNG..SKP..ADGAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     322.13|      84|     129|     274|     358|       3
---------------------------------------------------------------------------
  274-  358 (138.64/94.29)	DEE..HGPSKEDCIREFKKMLKE.RGVAPFSKWEKELPKIVFDSRFKAIpSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQL
  359-  407 (63.66/37.11)	LEEasEGIDSKTGYQDFE...R.........KWGA.......DPRFAAL.DKKEREALFKEKVR..ALEEK.................
  410-  489 (119.83/76.28)	.......SARNAVITDFKSMLREcKDIIPTSRWTKVKENFRSDPRYKAV.KHEERENAFNEYIAELKSAEREVEQAAKAKVDEQVCQL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23877 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREF
2) MVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTW
3) QLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIK
216
1
138
288
63
209










Molecular Recognition Features






MoRF SequenceStartStop




1) DGKKYYYD
2) DLIKKKLQ
3) FKKML
122
206
288
129
213
292