<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23861
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDLAYVCEWEKRPKSNHCPSIPLVCAWSCRNLIAFTTDLKNEEEKDLTHMIHILDTEHPWDVYSINSGHIEIITCLEWDQSGSRLLSADADGHIRCWGMTDHLANSWENTVGSMVEGDPIVALSWLHNGVKLALHVEKSGASNFGEKFSRVKFSPSLTLFGGKPMEGWIAVTISGLVTVSLLKPNGQVLTSTESLCRLRCRVALADIAFTGGGNIVVATSDGSSTSPIQFYKVCVSVVNEKCKIDTEILPSLFMRCTTDPARKDKYPAITHLKFLARDMSEQVLLCASNQNSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVANDTKFFPGLGLALAFHDGSVHIVHRLSLQTMAVFYGSSSQRPADEQAIKRQRAAGPLIHFKAMQLSWTSLALVGIDNHGKLSMLRISPSMGHVLDMNMSLRHLLFLLEYCMVTGYDWWDILLHVQPNMVQNLVEKLHEEYMRQNAALQQVLSTRIVAMKASLCKLSSNTVARVCDYHAKLFLIAISCTLKSLLRPHFLNTPDKSPGDRLTEICSKITDIDIDKVMINLKTEEFVLEMTTLQSLQQLIQWVGDFVLYLLASLPNQGSPVRPGHSFLRDGASLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWLCCRDEPHPSEPDDTLIDECCLLPSQLLIPNVDWLPINNGIISKLQNKQLIRLQFGKAPGLVGHTVSSQFDVFVRAPGQPKIDHLRRLHLGAYPTEECKSCTRYALHVSLR |
Length | 797 |
Position | Tail |
Organism | Gopherus agassizii (Agassiz's desert tortoise) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Archelosauria> Testudines> Cryptodira> Durocryptodira> Testudinoidea>
Testudinidae> Gopherus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.016 |
Instability index | 44.57 |
Isoelectric point | 7.31 |
Molecular weight | 89065.52 |
Publications | PubMed=28562605
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:Ensembl
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GO - Biological Function | thyroid hormone receptor binding GO:0046966 IEA:Ensembl
transcription coactivator activity GO:0003713 IEA:Ensembl
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GO - Biological Process | positive regulation of transcription initiation from RNA polymerase II promoter GO:0060261 IEA:Ensembl
|
Interaction
Repeat regions
Repeats |
>MDP23861
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 382.60| 122| 135| 453| 587| 1
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453- 587 (179.58/150.93) VLDMNmSLRHLLFLLEYcmvTGyDWWDILLHVQPNmvQ.NLVEKLHeEYMRQNAAL....QQVLSTRIVAMKASLCKLSSNTVARVCDYHAKLFLIAISCTLKSLLRPHflntPDKsPGDRLTEIC....SKITDIDIDKVMIN
594- 724 (203.02/126.98) VLEMT.TLQSLQQLIQW...VG.DFVLYLLASLPN..QgSPVRPGH.SFLRDGASLgmlrELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWLCCRDEPH....PSE.PDDTLIDECcllpSQLLIPNVDWLPIN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 115.77| 39| 140| 162| 204| 2
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162- 204 (52.90/56.34) GKPMEGwIAVTISGLV...TVSLLKpnGQVLTSTESLCRLRCrVAL
304- 345 (62.87/44.71) GLPVNN.IFQQISPVVgdkQPMILK..WRILSATNDLDRVSA.VAL
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