<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23858

Description Uncharacterized protein
SequenceMHAGSRSSSRVRRGQLDEAGRAQCMLGIIVRVWAGRAWCTLGIVVRGGEVGALHAGRKPSLLGKMAAPQQQPQAPSQAPAPGPQLTLQAGPGPQPQLQAQAAAQAQAQAAAQAQDFDPVQRYKMLIPQLKESLQNLMKIAAQNLVQNTNIDNGQKSNDGLVQRFDKSLEEFYALCDQLELCLRLAYECLSQSFDSTKHSPNLVPTATKPDAVQTESLPYTQYLSMIKSQISCAKDIHNALLECSNKITGKIPAQGGP
Length257
PositionTail
OrganismGopherus agassizii (Agassiz's desert tortoise)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Testudines> Cryptodira> Durocryptodira> Testudinoidea> Testudinidae> Gopherus.
Aromaticity0.04
Grand average of hydropathy-0.363
Instability index60.03
Isoelectric point8.98
Molecular weight27679.32
Publications
PubMed=28562605

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23858
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.80|      31|      33|      47|      78|       1
---------------------------------------------------------------------------
   47-   78 (52.73/28.93)	GGEVgALHAGRKP.SLLGKMAAPQQQPQAPSQA
   82-  113 (51.07/23.93)	GPQL.TLQAGPGPqPQLQAQAAAQAQAQAAAQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.72|      18|      32|     125|     142|       2
---------------------------------------------------------------------------
  125-  142 (28.23/20.04)	LIPQLKESLQNLMKIAAQ
  160-  177 (30.49/22.18)	LVQRFDKSLEEFYALCDQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23858 with Med29 domain of Kingdom Metazoa
Unable to open file!