<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23849

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAVNMKKFFPKGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQVNSSTCSRQGLKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHCLLKLGEILANLSNPQLRSQAEQCGTLIRSIPTMLSVHSEQLHKTGFPTVHAVVLLEGTMNLTGETQPLVEQLMMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTGELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNTAFEFLLKLTPLLDKADQRCNCDCTNFLLQECSKQGLLSEASMNNLMAKRKADREHAPQLKSDENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTHRSEESTKAASVRALLFDISFLMLCHVAQTYGSEVILSESNTGGEVFFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEIKLVQMKWHEACLNISAAILEILNAWENGVLAFESIQKITDSIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLYSENTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPSTGMDTMPYWNLLPPKRPIKEVLTDIFAKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEYTLRAVELLYSIFCLDMQQVTLVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASSRQKKRHREDIEDYISLFPLDDMQPSKLMRLLSSNEEDANILSSPTDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGGRGSILQFMPFTTVSELVKVSAMSSPKVVLAITDLSLPLGRQVAAKAIAAL
Length988
PositionTail
OrganismCapra hircus (Goat)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Artiodactyla> Ruminantia> Pecora> Bovidae> Caprinae> Capra.
Aromaticity0.07
Grand average of hydropathy-0.012
Instability index47.36
Isoelectric point6.53
Molecular weight110279.04
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23849
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     157.49|      47|     182|     703|     756|       1
---------------------------------------------------------------------------
  703-  756 (73.26/63.02)	KRPIKEVLTDIFakVLEKGWVDSRSIHIfdtllHMGGVYWFCNNLIKELLKETR
  893-  939 (84.23/54.24)	RDPLNRVLANLF..LLISSILGSRTAGP.....HTQFVQWFMEECVDCLEQGGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.12|      40|      68|     370|     413|       2
---------------------------------------------------------------------------
  370-  413 (62.40/44.20)	G.LLSEASMNNLMAKRKAdrehAPQLKSDENANIQPNPGLILRAE
  439-  479 (61.72/34.69)	GhMLSGKSLDLLLAAAAA....TGKLKSFARKFINLNEFTTHRSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.90|      43|     222|      44|      87|       3
---------------------------------------------------------------------------
   44-   87 (69.99/46.33)	EALLEQAMIGPS....PNPL.ILSYLKYAISSQVNSSTCSRQgLKFDDF
  260-  307 (67.91/40.29)	QPLVEQLMMVKRmqhiPTPLfVLEIWKACFVGLIESPEGTGE.LKWTAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.55|      24|     160|     516|     541|       6
---------------------------------------------------------------------------
  516-  541 (38.59/33.42)	NTGGEVFFFETWMQTcMPeEGKILNP
  679-  702 (47.96/30.12)	QTATQIKFPSTGMDT.MP.YWNLLPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.53|      22|      25|      95|     119|       8
---------------------------------------------------------------------------
   95-  119 (35.45/30.19)	ALLDIMDMFcdrLSCHGKAEECI..GL
  122-  145 (33.07/18.68)	ALLSALHWL...LRCTAASAERLreGL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23849 with Med24 domain of Kingdom Metazoa
Unable to open file!