<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23843
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDLAYICEWEKWPKSTHCPSVPLACTWSCRNLIAFTTDLRSDDQDLTRMIHILDTEHPWDVHSIRSEHSEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESPVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVNEKCRIDTEILPSLFMRCTTDLNRRDRLPAITHLKFLARDMSEQVLLCASSQTSSVVECWSLRKEGLPVNNIFQQLSPAVGDKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTMAIFYSSAAPRSVDEPAIKRPRTTGPAVHFKAMQLSWTSLALVGIDNHGRLSMLRISPSMGHSLDAGLALRHLLFLLEYCMVTGYDWWDILLHVQPNMVQSLVEKLHEEYTRQKAELQQVLSTRILAMKASLCKLSPCAVTRVCEYHAKLFLIAASSTLKSLLRPHVLNTPDKSPGDRLTEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSPLRPGHSFLRDGMSLGLLRELMVVIRIWGLLKPGCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPTSEPDEALVDECCLLPSQLLIPSLDWLPVSDGLVSRLQPKQPLRLHFGKPPALPGSATSLQLDGLIRKNFTRRGGWSHKGFHTLRSFQTCDTSITGRPAPAPGPL |
Length | 798 |
Position | Tail |
Organism | Balaenoptera acutorostrata scammoni (North Pacific minke whale) (Balaenoptera davidsoni) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia>
Eutheria> Laurasiatheria> Artiodactyla> Whippomorpha> Cetacea> Mysticeti>
Balaenopteridae> Balaenoptera.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.023 |
Instability index | 47.21 |
Isoelectric point | 7.29 |
Molecular weight | 88184.16 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | catalytic activity GO:0003824 IEA:InterPro
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GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP23843
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 193.05| 54| 183| 419| 476| 1
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122- 169 (25.00/ 8.79) .......LSWlhngVK....LALhvekSGASSFGeKFSRVKFSPSLtlfgGKP.MEGWIA..................
419- 476 (95.98/70.09) FKAMQ..LSW....TS....LAL....VGIDNHG.RLSMLRISPSM....GHS.LDAGLALRhllfLLEYCMVTGYDW
599- 653 (72.07/43.45) LQALQqlLQW....VGdfvlYLL....ASLPNQG...SPLR..P......GHSfLRDGMSLG....LLRELMVVIRIW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 158.84| 51| 198| 65| 118| 6
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65- 118 (91.35/68.80) RSEHSEAITCLEW...DQSGSRLL..SADADGQIKCWSMADH...LANSWE..SP.VGslvEGDP
261- 322 (67.49/43.28) RRDRLPAITHLKFlarDMSEQVLLcaSSQTSSVVECWSLRKEglpVNNIFQqlSPaVG...DKQP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 90.70| 22| 22| 721| 742| 8
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699- 719 (19.08/ 6.17) ...EALVDEccLLPSQLLIPSLDW
721- 742 (37.87/18.74) PVSDGLVSR..LQPKQPLRLHFGK
744- 765 (33.75/15.98) PALPGSATS..LQLDGLIRKNFTR
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