<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23838

Description Mediator of RNA polymerase II transcription subunit 25 isoform B
SequenceMMLWISQSGAPNQQSVDMHKHCILVAASNPYPLQTPVYVPRPQNLEQSETIDLDSGSHLYDAEAVAKAFPQFSISLSVICPKQLPKIKTIYNAGKRNNRAADSPLEAKTPHFLILISEGFREAWGALSRSGITSLPSNQSPVKVDAVSVTPVTEAPPTSMPVNGSIPNRQPVPAGNVAPATVKVEPVLVASMVSGPAFPHNSSVPRATSTSQGVPSLQTSSLSSVSQDIITNNENAQDTKPTVSMLPLRPVNPAQANVNILNNLSIARQVMNSAALSGGTSMGLPSMSQTPVAMHMSNMISSGMTSSVPAAQNVFSSGQSGITSMTSSGPLTGPAQVGQNSGLGSLTSNTSNLSSSSNIGISQPLGNLQGAVSMGQQVSGMSQGNLSGAQMVQGGVNMNQNVMSGLGQSVVSSGTGTMIPTPGMSQPVQSGMQPLVNNAATNMPLSQQTSGGMQSAQSKYVKVWEGSLSGQRQGQPVFITKLEGYRNSSASETLAANWPPVMQIVRLISQDHMNNKQYVGKADFLVFRAMNPHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAFRLIGMLFPGDMVVFKPQLSSQQQQQHQQMQNQQQHLPQLQQQQQLPHMQQQQLPQLQQQQQLPQLQQQQQLPQLQQQQQLQQQQLPQLQQQQQLPQLQQLPQLQQQQQLPQLQQLQPQQQQMVGAGMGQAFGQGPGRSQLVSQGQVSSQGATNIGGGGFMS
Length725
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.04
Grand average of hydropathy-0.360
Instability index70.29
Isoelectric point9.45
Molecular weight77410.81
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23838
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     134.22|      15|      15|     596|     610|       1
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  596-  610 (35.96/12.81)	QQQHLPQLQQQQQLP
  613-  627 (36.63/13.19)	QQQQLPQLQQQQQLP
  631-  643 (26.92/ 7.60)	QQQQLPQLQQQQQ..
  660-  674 (34.71/12.09)	QLQQLPQLQQQQQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     392.41|      62|      62|     308|     369|       2
---------------------------------------------------------------------------
  129-  178 (51.85/15.42)	................RS..GITSLPS......N........QSPVKV.......DAV..SVTPV..TEAPP.....TSMPVNGSIPNRQPVpaGNVA
  179-  237 (56.72/17.55)	..PATvkvEPV.L........VASMV.......SGPAfphnsSVPRAT.......STS..QGVPS..L..QT.....SSLSSVSQDIITNN...ENAQ
  251-  307 (54.75/16.69)	VnPAQ...ANVnILNNLS..IARQVMN......SAAL.....SG...........GTS..MGLPS..MSQTPvamhmSNMISS...GMTSS.......
  308-  369 (108.69/40.29)	V.PAA...QNV.FSSGQS..GITSMTS......SGPL.....TGPAQV.......GQN..SGLGS..LTSNT.....SNLSSSSNIGISQPL..GNLQ
  372-  433 (62.51/20.08)	V.SMG...QQV......S..G...M.S......QGNL.....SG.AQMvqggvnmNQNvmSGLGQsvVSSGT.....GTMIPTP..GMSQPV.qSGMQ
  436-  499 (57.90/18.06)	VnNAA...TNM.PLSQQTsgGMQSAQSkyvkvwEGSL.....SGQRQ........GQP..VFITK..L.EGY.....RNSSASETLAANWP.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.38|      29|     126|     549|     585|       6
---------------------------------------------------------------------------
  506-  542 (41.51/22.46)	RLISQD...HMNNKQY..VG...KADFLVFRamnPhgflgQLQEK
  549-  585 (36.87/39.87)	QLPSQTlllSVSDKAFrlIGmlfPGDMVVFK...P.....QLSSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.13|      34|      38|      42|      77|       7
---------------------------------------------------------------------------
   42-   77 (48.98/46.71)	PQNLEQSETIdLDSG...SHLYDAEAVAKAfPQFSISLS
   81-  117 (54.14/39.66)	PKQLPKIKTI.YNAGkrnNRAADSPLEAKT.PHFLILIS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23838 with Med25 domain of Kingdom Viridiplantae
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