<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23837

Description U-box domain-containing protein 35 isoform A
SequenceMSRVNSEKKLGAGRVVAVAIENNKTSQHAAKWAVDNLLPKDQCLLLIHVRQRPSSVPLSDHLSEAVGDNESKELFESFRVFCNRKSIQCKEVLLEDTDISKALIDTISTNTIELLVLGAPSRGGLVRRFRTTDVPSTVSKGAPQFCTVYIISKGKISSVRSATAPLAPNKAAIAAAAAAAAATTPRNQLQPQQQPHPQIMRSPERFSDSQPPRNYPPRPTSERPTAFGSHGAHHPMMDEDDIISPFTRAGKTYEPSKFQDSDISFVSSGRPSVERMFPTLYEDQDSASGIALGRFSDYDGRNSFASSYSSQSQGIDDHSFSSQSRLSDCTDDVEFEMRRLKLELKQTMEMYSSVCKEAMTAKHKAMELQRWKVEEQKKLEDSSMSSSPGEAVTSSSSMALMEMEQEKIREEALQKIAALEAQKRMSLQMERKKPEEKTVSSFGHTARYRRYTIEEIEEATNMFSESLKIGEGGYGPVYRCELDCTQVAIKVLKPDAAQGREQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFPRGKSRPPLPWQLRFQIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQLVTAKPPMGLTHHVGRSIEKGTFAEMLDPAIPDWPLEQTLHFAKLSLGCAEMRRKDRPDLGKVVLPELNKLRAFAEQCMSPMMMFALRSTGGGGGGAGYVPRNSNSSGLSSSTQDMSEVSGFSGYESRSSTSSLGRI
Length796
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-0.427
Instability index53.57
Isoelectric point6.78
Molecular weight88017.13
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23837
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.13|      20|      20|     243|     262|       1
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  224-  242 (34.18/18.43)	PTAFGSHG..AHH...PMMDEDDI
  243-  262 (35.44/19.36)	ISPFTRAGK.TYE...PSKFQDSD
  263-  285 (22.50/ 9.79)	IS.FVSSGRpSVErmfPTLYEDQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.16|      27|      50|      99|     125|       2
---------------------------------------------------------------------------
   99-  125 (41.86/28.75)	ISKALIDTISTNTIELLV.LGAPS..RGGL
  127-  150 (19.07/ 8.95)	......RRFRTTDVPSTVsKGAPQfcTVYI
  151-  173 (36.22/23.85)	ISKGKISSVRSATAPL.....APN..KAAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     119.63|      24|      57|     363|     386|       3
---------------------------------------------------------------------------
  335-  353 (23.63/10.82)	...FEMR.RLKLE.LKQTME..MYSS
  363-  386 (40.47/23.20)	HKAMELQ.RWKVE.EQKKLEDSSMSS
  395-  415 (28.09/14.10)	SSSMALM.EM....EQEKIREEALQK
  416-  441 (27.44/13.62)	IAALEAQkRMSLQmERKKPEEKTVSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.23|      40|     459|     286|     327|       4
---------------------------------------------------------------------------
  286-  327 (67.15/41.61)	SASGIALGrfSDYDGRNSFASSYSSQSQGIDDHS.FSS.QSRLS
  748-  789 (64.08/33.95)	STGGGGGG..AGYVPRNSNSSGLSSSTQDMSEVSgFSGyESRSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.13|       8|      25|     185|     197|       9
---------------------------------------------------------------------------
  185-  197 (10.17/17.70)	PRNqlQPqqqPHP
  212-  219 (19.97/ 9.93)	PRN..YP...PRP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23837 with Med32 domain of Kingdom Viridiplantae
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