<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23836

Description U-box domain-containing protein 35 isoform B
SequenceMSRVNSEKKLGAGRVVAVAIENNKTSQHAAKWAVDNLLPKDQCLLLIHVRQRPSSVPLSDHLSEAVGDNESKELFESFRVFCNRKSIQCKEVLLEDTDISKALIDTISTNTIELLVLGAPSRGGLVRFRTTDVPSTVSKGAPQFCTVYIISKGKISSVRSATAPLAPNKAAIAAAAAAAAATTPRNQLQPQQQPHPQIMRSPERFSDSQPPRNYPPRPTSERPTAFGSHGAHHPMMDEDDIISPFTRAGKTYEPSKFQDSDISFVSSGRPSVERMFPTLYEDQDSASGIALGRFSDYDGRNSFASSYSSQSQGIDDHSFSSQSRLSDCTDDVEFEMRRLKLELKQTMEMYSSVCKEAMTAKHKAMELQRWKVEEQKKLEDSSMSSSPGEAVTSSSSMALMEMEQEKIREEALQKIAALEAQKRMSLQMERKKPEEKTVSSFGHTARYRRYTIEEIEEATNMFSESLKIGEGGYGPVYRCELDCTQVAIKVLKPDAAQGREQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFPRGKSRPPLPWQLRFQIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQLVTAKPPMGLTHHVGRSIEKGTFAEMLDPAIPDWPLEQTLHFAKLSLGCAEMRRKDRPDLGKVVLPELNKLRAFAEQCMSPMMMFALRSTGGGGGGAGYVPRNSNSSGLSSSTQDMSEVSGFSGYESRSSTSSLGRI
Length795
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-0.422
Instability index52.91
Isoelectric point6.63
Molecular weight87860.94
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23836
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.76|      13|      19|     184|     202|       1
---------------------------------------------------------------------------
  184-  202 (15.67/20.82)	PRNqlQPqqqPHPQIMRsP
  211-  223 (29.09/13.15)	PRN..YP...PRPTSER.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.00|      26|      28|     268|     295|       2
---------------------------------------------------------------------------
  268-  283 (13.63/ 8.58)	...............GRPSVErmFPTLYEDQ
  284-  310 (36.47/17.83)	DSASGIALGRFSdydGRNS....FASSYSSQ
  315-  333 (19.90/ 6.27)	DDHSFSSQSRLS..dCTDDVE..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.47|      24|      50|      99|     125|       3
---------------------------------------------------------------------------
   99-  125 (34.87/38.86)	ISKALIDTISTNTIELlvlGAPSRGGL
  133-  143 (14.50/ 6.36)	VP....STVSK........GAPQ....
  150-  172 (37.10/30.73)	ISKGKISSVRSATAPL....APNKAAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     119.81|      24|      57|     362|     385|       4
---------------------------------------------------------------------------
  334-  352 (23.65/11.74)	...FEMR.RLKLE.LKQTME..MYSS
  362-  385 (40.47/25.05)	HKAMELQ.RWKVE.EQKKLEDSSMSS
  394-  414 (28.24/15.37)	SSSMAL...MEM..EQEKIREEALQK
  415-  440 (27.45/14.75)	IAALEAQkRMSLQmERKKPEEKTVSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.24|      18|      18|     226|     243|       9
---------------------------------------------------------------------------
  226-  243 (35.45/24.57)	FGSHG.AHHPMMDEDDIIS
  245-  263 (27.80/17.59)	FTRAGkTYEPSKFQDSDIS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23836 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAAAATTPRNQLQPQQQPHPQIMRSPERFSDSQPPRNYPPRPTSERPTAFGSHGAHHPMMDEDDIISPFTRAGK
2) GAGYVPRNSNSSGLSSSTQDMSEVSGFSGY
3) RWKVEEQKKLEDSSMSSSPGEAVTSSSSMALMEME
176
754
369
250
783
403










Molecular Recognition Features






MoRF SequenceStartStop




1) RMFPTLY
274
280