<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23832

Description Mediator of RNA polymerase II transcription subunit 25 isoform A
SequenceMLPHVPILFVPNITSANLFSSALERVLLQLMARFHLWHDTSLAHLPLKFGAILTPYASTSFVNRRFRIFQSPMLRPPLFSVFSKATAFILPLIFWQRTFWLPILSLSPFAHGYLPCGTLNTSLYLGMFPNSQSGDPNQQNVDMHQHCILVAASNPYPLQTPIYVPQLQNLEQSETIDSFPGNRLYDAEAVAKAFPQFSISLSVICPKELPKIKGIYNAGNRNSKAADPPVLAKTPHFLILISEGFREAQGALKVGEGYSNSSESEKASTSALKIWVDAFVPSCSKMAPCNANSSAYISSHMNNKEYVVFQAMNPYGFRGHLEDKKKLLLQRLLFWINRELEIVALLQFLFGK
Length352
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.12
Grand average of hydropathy0.049
Instability index47.00
Isoelectric point9.21
Molecular weight39480.35
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23832
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     171.44|      53|     237|      56|     112|       1
---------------------------------------------------------------------------
   56-  112 (85.71/64.27)	YASTSFVNRRFRIFQSpmLRPPLF..SVFSKATAFILPLIFW.QRTfwLPILSLSPFAHG
  296-  351 (85.73/50.48)	YISSHMNNKEYVVFQA..MNPYGFrgHLEDKKKLLLQRLLFWiNRE..LEIVALLQFLFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.71|      13|      18|     242|     254|       3
---------------------------------------------------------------------------
  242-  254 (21.73/15.06)	SEGFREAQGALKV
  262-  274 (19.98/13.33)	SESEKASTSALKI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23832 with Med25 domain of Kingdom Viridiplantae
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