<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23830

Description Mediator of RNA polymerase II transcription subunit 25 isoform B
SequenceMPPIISSILTLSLTDVKLGSFPIWSRPIVLSLGKRNNRAADPPLEAKTPHFLILISEGFREARGALSRSGITSLPSNQSPVKVDAVSVTPVTGAPPTSMPVNGSIPNRQPVPAGNVAPATVKVEPVPVTSMVSGPAFPHNSSVPRATSTSQGVPSLQTSSPSSVSQDIITNNETAQDTKPTVSMLPLRPVNPVQANVNILNNLSQARQVMNSAALSGGTSMGLPSMGQTPVAMHMSNMISSGMTSSVPAAQNVFSSGQSGITSMTSSGPLTVPAQVGQNSGLGSLTSNTSNLSSSSNIGISQPLGNLQGVVSIGQQVSGMSQGNLSGAQMVQGGVSMNQNVMSGLGQSVVSSGTGTMIPTPGMSQPVQSVMQPLVNNAAANMPLSQQTSGGMQSAQSKYVKVWEGSLSGQRQGQPVFITKLEGYRNSSASET
Length432
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.02
Grand average of hydropathy-0.102
Instability index59.18
Isoelectric point10.21
Molecular weight44180.52
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23830
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     131.54|      32|      37|      75|     106|       2
---------------------------------------------------------------------------
   75-  106 (59.13/27.36)	PS.NQSP..VKV...............DAVSVTPVTGAPPTSMPVNGSIP
  112-  144 (44.21/18.52)	PAgNVAPatVKV...............EPVPVTSMVSGP..AFPHNSSVP
  157-  198 (28.19/ 9.03)	QT.S.SP..SSVsqdiitnnetaqdtkPTVSMLPLRPVNPVQANVN....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.40|      19|      19|     259|     277|       3
---------------------------------------------------------------------------
  259-  277 (32.80/12.78)	SGITSMTS.SGPLTVPAQVG
  280-  299 (22.73/ 6.65)	SGLGSLTSnTSNLSSSSNIG
  318-  336 (29.87/11.00)	SGMSQGNL.SGAQMVQGGVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.54|      20|      23|     337|     359|       4
---------------------------------------------------------------------------
  337-  357 (30.16/12.72)	MNQNVMSGLgQSVVSSGTGTM
  363-  382 (34.38/14.01)	MSQPVQSVM.QPLVNNAAANM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.65|      11|      17|       3|      13|       5
---------------------------------------------------------------------------
    3-   13 (18.81/12.46)	PIISSILTLSL
   22-   32 (21.84/15.76)	PIWSRPIVLSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.47|      15|      21|     391|     405|       9
---------------------------------------------------------------------------
  391-  405 (27.08/19.98)	GMQSAQSKYVKVWEG
  409-  423 (26.39/19.26)	GQRQGQPVFITKLEG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23830 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSRSGITSLPSNQSPVKVDAVSVTPVTGAPPTSMPVNGSIPNRQPVPAGNVAPATVKVEP
2) PVTSMVSGPAFPHNSSVPRATSTSQGVPSLQTSSPSSVSQDIITNNETAQDTKPTVSMLPLRPVN
3) QVMNSAALSGGTSMGLPSMGQTPVAMHMSNMISSG
4) SVPAAQNVFSSGQSGITSMTSSGPLTVPAQVGQNSGLGSLTSNTSNLSSSSNIG
5) SVVSSGTGTMIPTPGMSQPVQSVMQPLVNNAAANMPLSQQTSGG
66
127
208
246
348
125
191
242
299
391










Molecular Recognition Features






MoRF SequenceStartStop




1) KYVKVWE
2) VFITKLEGYRN
398
416
404
426