<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23818

Description U-box domain-containing protein 33 isoform A
SequenceMAVVSPMPATPPQVNPVNLLRNTGVPGIMTSRREIVNEPSPSMVNETIYVAVAKDVKDSKLNLIWAIQNSGGRRICILHVHVPAPMIPLALMGAKFPASALREEGVQDYHERERLKMHKTLDAYLFICQRMGVRARKLLHIEMDCIEKGIVELISRYGIQKLVMGAASDKYHSRRMTSLRSKKAIYVCEQAPASCHIQFICNGYLIHTRDCSLNRGNVEVEFPLLQQMANSEVGHSPNLSFQSILQGQNHGIKLTNPAQELFRRVRSVNDGHMRSLESVSSSEGFLTPPSKFSKNISSIEPGLTPNLINDGSENALDLILNDPSLINKDLHHSSSPSVLDEGMDDALYHQLEQVMAEASNARRDAYQETVRRGKAEKDAIDAIHRAKATENLYKEELKLRKEQEEAVEKANEKLNNMKSQTDKVNEELRLALDQNSSLENQIASTELMVKELKQKIIFSLDLLQNYKDELDDLQIQRDNAVGEAEEFRRKQGEASSSTQELHCFSDFSFQEIKEATSNFNPSKKIGEGGYGSIFKGVLRHTEVAIKMLNPDSTQGPLEFQQEVEVLSKLRHPNLITLIGACTESWTLVYEYLPNGSLEDRLNRKDNTPPLSWQTRICIAAELCSALNFLHSNKPHSIAHGDLKPANILLDANLVSKLSDFGICRILSCQDSSSNSTTQFWRTVPKGTFVYVDPEFLASGELTPKSDVYSFGIILLRLMTGKPALGIIKEVQYALDAGKLKSILDPLAGEWPFMLAEELIRLALRCCEMNRKNRPELYSDVWRILEPMRASSVVTNTSQLGSQRLCQPPPYFICPIFLEVMQDPHVASDGFTYEAEAIREWLESGRDTSPRTNSKLAHHNLVPNHALRHAIQNWLQSQ
Length877
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.379
Instability index46.09
Isoelectric point6.26
Molecular weight98554.35
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23818
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     487.26|     166|     192|     451|     640|       1
---------------------------------------------------------------------------
  428-  621 (233.78/247.22)	LRLALD.QNSSLENQIASTelmvkELKQKIIFsLDllQNYKDELDDLQIQR.....DNAVGEAEEFRRK..QGEassstqelHCFSDFSF...QEIKEATSNFNPSKKIGEGGYGSIFKGVLRHTEVAI......KMLNPDSTQGPLEFQQEVEVLSkLR.....HPNLITLigaCTESWTLVyEYLPNGSLedrlnrKDNTPPLSWQtRICIAAE
  622-  809 (253.48/202.79)	LCSALNfLHSNKPHSIAHG.....DLKPANIL.LD..ANLVSKLSDFGICRilscqDSSSNSTTQFWRTvpKGT........FVYVDPEFlasGELTPKSDVYSFGIILLRLMTGKPALGIIKEVQYALdagklkSILDPLAGEWPFMLAEELIRLA.LRccemnRKNRPEL...YSDVWRIL.EPMRASSV......VTNTSQLGSQ.RLCQPPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     176.96|      53|     611|     199|     253|       4
---------------------------------------------------------------------------
  199-  253 (88.50/58.23)	FICNGYLIHTRDCSLNRGNVEVEFPLLQQMANSEVGHSP....NLSFQSILqgQNHGIK
  811-  867 (88.46/52.28)	FICPIFLEVMQDPHVASDGFTYEAEAIREWLESGRDTSPrtnsKLAHHNLV..PNHALR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.83|      21|      24|     361|     381|       9
---------------------------------------------------------------------------
  361-  381 (33.70/23.48)	ARRDAYQETVRRGKAEKDAID
  388-  408 (32.12/22.04)	ATENLYKEELKLRKEQEEAVE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23818 with Med32 domain of Kingdom Viridiplantae
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