<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23816

Description U-box domain-containing protein 33 isoform C
SequenceMDCIEKGIVELISRYGIQKLVMGAASDKYHSRRMTSLRSKKAIYVCEQAPASCHIQFICNGYLIHTRDCSLNRGNVEVEFPLLQQMANSEVGHSPNLSFQSILQGQNHGIKLTNPAQELFRRVRSVNDGHMRSLESVSSSEGFLTPPSKFSKNISSIEPGLTPNLINDGSENALDLILNDPSLINKDLHHSSSPSVLDEGMDDALYHQLEQVMAEASNARRDAYQETVRRGKAEKDAIDAIHRAKATENLYKEELKLRKEQEEAVEKANEKLNNMKSQTDKVNEELRLALDQNSSLENQIASTELMVKELKQKIIFSLDLLQNYKDELDDLQIQRDNAVGEAEEFRRKQGEASSSTQELHCFSDFSFQEIKEATSNFNPSKKIGEGGYGSIFKGVLRHTEVAIKMLNPDSTQGPLEFQQEVEVLSKLRHPNLITLIGACTESWTLVYEYLPNGSLEDRLNRKDNTPPLSWQTRICIAAELCSALNFLHSNKPHSIAHGDLKPANILLDANLVSKLSDFGICRILSCQDSSSNSTTQFWRTVPKGTFVYVDPEFLASGELTPKSDVYSFGIILLRLMTGKPALGIIKEVQYALDAGKLKSILDPLAGEWPFMLAEELIRLALRCCEMNRKNRPELYSDVWRILEPMRASSVVTNTSQLGSQRLCQPPPYFICPIFLEVMQDPHVASDGFTYEAEAIREWLESGRDTSPRTNSKLAHHNLVPNHALRHAIQNWLQSQ
Length735
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-0.441
Instability index42.31
Isoelectric point5.79
Molecular weight82699.78
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23816
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.70|      32|     186|     464|     498|       1
---------------------------------------------------------------------------
  464-  498 (52.71/56.19)	NTPPLSWQtRICIAAE..LCSAlnFLHSNK.PHSIAHG
  653-  687 (52.99/42.52)	NTSQLGSQ.RLCQPPPyfICPI..FLEVMQdPHVASDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.44|      30|      30|     232|     261|       2
---------------------------------------------------------------------------
  232-  261 (47.21/32.60)	KAEKDAI....DAIHRAKATENLYKEELKLRKEQ
  263-  292 (26.67/15.32)	....EAVekanEKLNNMKSQTDKVNEELRLALDQ
  308-  328 (25.57/14.40)	KELKQKI......IFSLDLLQN.YKDEL......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.24|      10|      15|     137|     146|       3
---------------------------------------------------------------------------
  137-  146 (18.90/14.17)	VSSSEGFLTP
  154-  163 (19.35/14.72)	ISSIEPGLTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     194.75|      62|     265|      67|     135|       4
---------------------------------------------------------------------------
   67-  135 (95.83/78.23)	RDCSLnrGNVEvEFPLLQQMANS...EVGHSPNLSFQSILQGQNHgiklTNPAQELFR.RVRSVNDGHMRSLE
  335-  400 (98.93/61.56)	RDNAV..GEAE.EFRRKQGEASSstqELHCFSDFSFQEIKEATSN....FNPSKKIGEgGYGSIFKGVLRHTE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.50|      16|      16|     165|     180|       6
---------------------------------------------------------------------------
  165-  180 (27.14/15.07)	LIND.....GSENALDLILND
  183-  203 (22.36/11.32)	LINKdlhhsSSPSVLDEGMDD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23816 with Med32 domain of Kingdom Viridiplantae
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