<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23814

Description Putative mediator of RNA polymerase II transcription subunit 26c isoform A
SequenceMDLDDFRSILDTAGVDVWMFIDAAIAVASSDSAGDLKRRRDGIVERLYAATAAPPWCRNCDEGGHRLNGHRIKKQSRHSPSPERQPHRSTATASPATPQSLDNGEDEDNDEDLDPYGGLLDDEQKKILEIKEQLEEPDQSEDSLVELLQSLADMDITFQGLKETDIGRHVNRLRKHPSNDLRRLVKLLVRKWKEIVDEWVKLNPRGGSNTLMADGDSSPVQKTTQNGHHQQIPDFAYSPNPHNGSSGSDRNNSEAERKPKVVPRSEPRPKHAPSPSVSTPASATQNRQRESSFDAERLASARRRLQENYKEAEIAKRQRTIQVMDIHDLPKAKPKNNAFFGKNKGGGGGGSQGRHW
Length356
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.04
Grand average of hydropathy-1.051
Instability index63.84
Isoelectric point6.65
Molecular weight39774.50
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP23814
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.88|      47|     142|      35|     111|       1
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   48-   97 (81.30/71.56)	YAATAAPpwcRNCDEGGHRLNGHRIKKQS...RHSPSPERQPHRSTATASPAT
  235-  284 (80.58/26.57)	FAYSPNP...HNGSSGSDRNNSEAERKPKvvpRSEPRPKHAPSPSVSTPASAT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23814 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LNGHRIKKQSRHSPSPERQPHRSTATASPATPQSLDNGEDEDNDEDLDPYGGL
2) NPRGGSNTLMADGDSSPVQKTTQNGHHQQIPDFAYSPNPHNGSSGSDRNNSEAERKPKVVPRSEPRPKHAPSPSVSTPASATQNRQRESSFDAERLASARRRLQENYKEAEIAKRQRTIQVMDIHDLPKAKPKNNAFFGKNKGGGGGGSQGRHW
67
203
119
356










Molecular Recognition Features






MoRF SequenceStartStop




1) GGSQGRHW
2) NAFFGKNKG
349
337
356
345