<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23788

Description Mediator of RNA polymerase II transcription subunit 33A isoform D
SequenceMGVWDGIMQVTKLAQEKKTDPLLWSIQVSSALNSGGVSLPSIELAHRLVSHICFDNHLPMTWKFLEKAMSLRLLPPFLALSLLSSRVLPLRRLHPSAYTLYMDLLSRHAFSLLIHFPNYPSVMSSIHHLLHFSQLYSSLDPHPGVVLVLFLFTLVSQLLEASLSDEGLLQHSPRFLPVDPADIVIDNNDALRRKNTAMAIQIISRFLHHKLTSRILALVQRNMPAHWGPFLHQLQRLAANSTLLRSLKHVTPESLLPLDFNSPTGIKLLCSEWKTTPTLELNAVMADSCAVQSRHDSWSLLWLPIDLILEDAMDGNHVAEASAVEALTGLVKALQAVNGTAWHSAFLGLWIAALRLVQRERDPGEGPVPRLDTCLSMLLSITTLVVANLIEEEEGELIEEAEHSPANQRMDKQALGERHGELVTSLQLLGDYENLLTPPQSVIWGANQAAAKATLFVSGHSGYLEHTNVNDLPTNCSHGCNGSLAEIEKVFEFAIKGSDEEKISAATILCGASLVRGWNVQEHIVFFIIKMLSPPVPPKYSGTESYLISHAPFLNVFLVGISSVDSVQIFSLHGVVPLLAAVLMPICEAFGSSVPNVSWTAVTGEKLTCHAVFSNAFILLLRLWRFDRPPVEHVMGGAATPALGSQLGPEYLLLVRNCMLASYGKSPRDRVRSRRFSKMISFSLEPLFMDSFPKLNIWYRQHQECIASTCNTLAPGGPVSQIVEALLSMMCKKINRSAQSLTPTTSGSSNSSLSSLDDALMKLKVPAWDILEATPFVLDAALTACAHGRLSPRELATGLKDLADFLPATLGTIVSYLSSEVTRGIWKPAFMNGTDWPSPAANLSIVEQQIKKILAATGVDVPSLAIDGNAPATLPLPLAAFLSLTITYKLDKSCERFVVLAGPSLIALSSGCPWPCMPIVGALWAQKVKRWSDFFVFSASATVFHHSRDAVVQLLRSCFASTLGLGSACIYNNGGVGTLLGHGFGSHYSGGFTPVAPGFLYLRVYRSIRDVMFLTDEIVSLLMLSVRDIANGGLPKGEVEKLKKTKYGMRYGQVSLSGSMTRVKHAALLGASFLWISGGSGLVQSLITETLPSWFLSAQGLEQEGGESGVVVAMLRGYALACFAVLGGTFAWGIDSSSPASKRRPKVLEIHLEFLANALDGKISLRCDCATWRAYVSGVMSLMVSCTPLWIQELDVGILKRMSNGLRQLNEEDLALHLLEIRGTSVMGEVAEMICQTRL
Length1239
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.08
Grand average of hydropathy0.224
Instability index45.64
Isoelectric point6.70
Molecular weight135172.41
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23788
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.39|      33|      37|     617|     652|       1
---------------------------------------------------------------------------
  619-  651 (59.34/38.48)	LLLR...LWRFDRPPVEHVMGGAATPALGSQLGPEY
  653-  688 (50.04/29.43)	LLVRncmLASYGKSPRDRVRSRRFSKMISFSLEPLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.22|      18|      37|     129|     146|       2
---------------------------------------------------------------------------
  129-  146 (32.93/16.17)	LLHFSQLYSSLDPHPGVV
  168-  185 (32.29/15.73)	LLQHSPRFLPVDPADIVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.77|      22|      37|     824|     845|       3
---------------------------------------------------------------------------
  824-  845 (44.80/26.54)	GIWKPAF.MNG...TDWPSP.AANLSI
  858-  884 (24.97/11.37)	GVDVPSLaIDGnapATLPLPlAAFLSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     219.50|      69|     267|     473|     547|       6
---------------------------------------------------------------------------
  473-  547 (110.55/107.42)	PTNcSHGCNGSLAEIE......KVFEFAIKGSDEEKISAATILCGASLVRGWNVQEHivffiIKMLSPPVPPKYSGTESYL
  743-  817 (108.95/85.77)	PTT.SGSSNSSLSSLDdalmklKVPAWDILEATPFVLDAALTACAHGRLSPRELATG.....LKDLADFLPATLGTIVSYL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.49|      19|      37|     205|     224|       7
---------------------------------------------------------------------------
  205-  224 (29.59/21.54)	RFLHHKLTSRILALvQRNMP
  245-  263 (33.89/20.23)	RSLKHVTPESLLPL.DFNSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23788 with Med33 domain of Kingdom Viridiplantae
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