<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23784

Description Mediator of RNA polymerase II transcription subunit 33A isoform B
SequenceMGVWDGIMQVTKLAQEKKTDPLLWSIQVSSALNSGGVSLPSIELAHRLVSHICFDNHLPMTWKFLEKAMSLRLLPPFLALSLLSSRVLPLRRLHPSAYTLYMDLLSRHAFSLLIHFPNYPSVMSSIHHLLHFSQLYSSLDPHPGVVLVLFLFTLVSQLLEASLSDEGLLQHSPRFLPVDPADIVIDNNDALRRKNTAMAIQIISRFLHHKLTSRILALVQRNMPAHWGPFLHQLQRLAANSTLLRSLKHVTPESLLPLDFNSPTGIKLLCSEWKTTPTLELNAVMADSCAVQSRHDSWSLLWLPIDLILEDAMDGNHVAEASAVEALTGLVKALQAVNGTAWHSAFLGLWIAALRLVQRERDPGEGPVPRLDTCLSMLLSITTLVVANLIEEEEGELIEEAEHSPANQRMDKQALGERHGELVTSLQLLGDYENLLTPPQSVIWGANQAAAKATLFVSGHSGYLEHTNVNDLPTNCSGNLRHLIVEACIARHLLDTSAYFWPGYVSAPFNQLPHSIPNHLPSWSSLMKGSPLTPPLVNVLVATPASSLAEIEKVFEFAIKGSDEEKISAATILCGASLVRGWNVQEHIVFFIIKMLSPPVPPKYSGTESYLISHAPFLNVFLVGISSVDSVQIFSLHGVVPLLAAVLMPICEAFGSSVPNVSWTAVTGEKLTCHAVFSNAFILLLRLWRFDRPPVEHVMGGAATPALGSQLGPEYLLLVRNCMLASYGKSPRDRVRSRRFSKMISFSLEPLFMDSFPKLNIWYRQHQECIASTCNTLAPGGPVSQIVEALLSMMCKKINRSAQSLTPTTSGSSNSSLSSLDDALMKLKVPAWDILEATPFVLDAALTACAHGRLSPRELATDLADFLPATLGTIVSYLSSEVTRGIWKPAFMNGTDWPSPAANLSIVEQQIKKILAATGVDVPSLAIDGNAPATLPLPLAAFLSLTITYKLDKSCERFVVLAGPSLIALSSGCPWPCMPIVGALWAQKVKRWSDFFVFSASATVFHHSRDAVVQLLRSCFASTLGLGSACIYNNGGVGTLLGHGFGSHYSGGFTPVAPGFLYLRVYRSIRDVMFLTDEIVSLLMLSVRDIANGGLPKGEVEKLKKTKYGMRYGQVSLSGSMTRVKHAALLGASFLWISGGSGLVQSLITETLPSWFLSAQGLEQEGGESGVVVAMLRGYALACFAVLGGTFAWGIDSSSPASKRRPKVLEIHLEFLANALDGKISLRCDCATWRAYVSGVMSLMVSCTPLWIQELDVGILKRMSNGLRQLNEEDLALHLLEIRGTSVMGEVAEMICQTRL
Length1300
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.08
Grand average of hydropathy0.229
Instability index46.29
Isoelectric point6.74
Molecular weight141889.13
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23784
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     148.94|      35|      37|     681|     716|       1
---------------------------------------------------------------------------
  681-  715 (63.15/31.89)	FILLLR...LWRFDRPPVEHVMGGAATPALGSQLGPEY
  717-  752 (40.71/19.70)	..LLVRncmLASYGKSPRDRVRSRRFSKMISFSLEPLF
  756-  782 (45.08/21.17)	FP.KLN...IWY..RQHQECIASTCNTLAPG...GP..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.22|      18|      37|     129|     146|       2
---------------------------------------------------------------------------
  129-  146 (32.93/20.25)	LLHFSQLYSSLDPHPGVV
  168-  185 (32.29/19.70)	LLQHSPRFLPVDPADIVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.77|      22|      37|     885|     906|       3
---------------------------------------------------------------------------
  885-  906 (44.80/28.49)	GIWKPAF.MNG...TDWPSP.AANLSI
  919-  945 (24.97/12.20)	GVDVPSLaIDGnapATLPLPlAAFLSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.49|      19|      37|     205|     224|       4
---------------------------------------------------------------------------
  205-  224 (29.59/23.07)	RFLHHKLTSRILALvQRNMP
  245-  263 (33.89/21.66)	RSLKHVTPESLLPL.DFNSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     251.22|      66|     631|     494|     562|       5
---------------------------------------------------------------------------
   29-   77 (40.20/13.17)	SSALNSGGVSLPSIELAHRLvshicfDNHLPmTW....KFLEKAMSlrLLPPF..........................
  497-  562 (117.59/64.44)	SAYFWPGYVSAPFNQLPHSI......PNHLP.SW....SSLMKGSP..LTPPLVNVLVATPASSLAEIEKVFEFAIKGS
 1133- 1198 (93.42/46.58)	.SFLW...ISGGSGLVQSLI......TETLP.SWflsaQGLEQEGG..ESGVVVAMLRGYALACFAVLGGTFAWGIDSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.81|      39|     785|     455|     495|       7
---------------------------------------------------------------------------
  455-  495 (60.48/42.04)	LFVSGHSGYLEHTNVNDLPTNCSGnLRHLIVEAcIARHLLD
 1243- 1281 (68.33/38.07)	LMVSCTPLWIQELDVGILKRMSNG.LRQLNEED.LALHLLE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23784 with Med33 domain of Kingdom Viridiplantae
Unable to open file!