<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23783

Description U-box domain-containing protein 35 isoform C
SequenceMLLPFKIMCEQRKVHVDVVVIESDDVATAVAEEVAKGAITKLVVGASSHGLFKSKQKGMSTKISVCTPRFCTIYAISKGKLSIRPSDMPIGGSIIDDASESETSLSTSSSSNYNSTSQTESASVSSYAGLQSSSLTTQRFQALSSINSALLSTNPSFPDTNHSRGQSLDLGTENTATSSARNSDIDHALSRVSSCKSFISDTESWMYDQNSSKEVQLETTLPSPNRQAKFNLELEKLRIELRHAQGLHAVAQSEKIEASRKLNELSKRRSEETMKTKEIIAKEEKAKDLARLERDKYQDASREAAYLKECAEREAAERKETELKAILAAKETKKLEGALSGSTPQYRKFAWDEIVLATSSFSEDLKIGMGAYGIVYKCNLYHTNVAVKVLTLNPNENRKRKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLRKNNTSPIPWFERFRIAWEVASALAFLHSSKPEPIIHRDLKPANILLDRNLVSKIGDIGLSTVLHSDNLSTMYKDTAPVGTLSYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALAHKVETAIDGGNLTDILDTEAGAWPYQETLELALLGLSCAELRRRDRPDLQDHVLPTLERLKQVFDRAQHSASIVTIKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLEENHKSPMTNMALPHKHLIPNYTLLSAILEWKSRES
Length717
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.395
Instability index46.08
Isoelectric point6.58
Molecular weight79871.87
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23783
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.92|      26|      62|     232|     257|       1
---------------------------------------------------------------------------
  232-  257 (40.23/23.23)	L.ELEKLRIELRHAQGLHAVAQSEKIE
  262-  287 (31.70/16.94)	LnELSKRRSE.ETMKTKEIIAKEEKAK
  292-  317 (39.99/23.05)	L.ERDKYQDASREAAYLKECAEREAAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     188.88|      61|      71|      58|     126|       2
---------------------------------------------------------------------------
   58-  126 (91.18/80.75)	GMSTKiSVCTPRFCTIYAISKGKLSIRPSdMPiggsiiDDASESETSL.....STSSSSNYNSTSQTESASVSS
  129-  194 (97.69/63.70)	GLQSS.SLTTQRFQALSSINSALLSTNPS.FP......DTNHSRGQSLdlgteNTATSSARNSDIDHALSRVSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.92|      47|      71|     491|     537|       4
---------------------------------------------------------------------------
  491-  537 (77.40/48.46)	ILLDRNLVSKIGDIGLSTVLHSDNLSTMYKDTAPVGTLSYIDPEYQR
  564-  610 (76.52/47.83)	IALAHKVETAIDGGNLTDILDTEAGAWPYQETLELALLGLSCAELRR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23783 with Med32 domain of Kingdom Viridiplantae
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