<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23773

Description Mediator of RNA polymerase II transcription subunit 15a
SequenceMSASPLDSTAQTGQSSGGDWQEQVYQHIKSMKESYLPELNEMYQKIATQLQQHNSLPTQPKLDQLEKMNVFKMLERIIAFLQVSKSNISPNFKEKLGSYENHIINFINRKRHKKAMPPMQSRQLPLPHIDWQEEVYQKIKSMKENYLPELNEMYQKSASKLQRHTSLPQQPKSYKLEKLKKFMKMLECAIAFLQVSKSNMSPNYRLKLDSCEKQIIKIININRPKKIVPPLQYGQFPPPHMQSH
Length244
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.08
Grand average of hydropathy-0.805
Instability index67.59
Isoelectric point9.66
Molecular weight28642.01
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23773
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     160.58|      25|      25|      66|      90|       1
---------------------------------------------------------------------------
   41-   60 (23.69/11.41)	.......EMYQKIATQL..QQHNSlPTQP
   66-   90 (42.96/26.48)	EKMNVF.KMLERIIAFL..QVSKS.NISP
   94-  118 (32.26/18.10)	EKLGSY.E..NHIINFInrKRHKK.AMPP
  152-  171 (22.49/10.47)	.......EMYQKSASKL..QRHTSlPQQP
  177-  202 (39.18/23.52)	EKLKKFmKMLECAIAFL..QVSKS.NMSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.18|      22|     109|      19|      40|       2
---------------------------------------------------------------------------
   19-   40 (47.96/26.95)	DWQEQVYQHIKSMKESYLPELN
  130-  151 (47.22/26.44)	DWQEEVYQKIKSMKENYLPELN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23773 with Med15 domain of Kingdom Viridiplantae
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