<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23768

Description U-box domain-containing protein 34
SequenceMSRMNSEKKLGAGRVVAVAIENNKTSQHAAKWAVDNLLPKDQCLLLIHVRQRASSAPSSDHLSEAVADKESKELFESFRVFCNRKSIQCKEVLLEDMDISKALIDAISTNTIELLVLGAPSRSGLVRRFRTTDVPSTVSKGAPQFCTVYIISKGKISSVRSATAPLALKKAAIAAASPRNQLQPQQQQPHPQTMPSPERFSDPQLPRNYPPRPTSERAAPHGSHGARPTMMDEDDIISPFTRAGKTYESSKLLDSDISFVSSGRPSVDRMFPTMYEDMDSAMSGIAPGRFSDYDGRSSFASSYSSQSQGMDDCYSFSSQSRLSDCSTDDVEFEMRRLKLELKQTMEMYSSACKEAMTAKQKAMELKRLKVEEQKKLEESSSLSSGGEAAAAASSMALMMEMEKEKIREEALQKIAALEEQKRMSLQMERKIKPEKNVSVSSFGHGTASYRRYSIEEIEEATNMFSESLKIGEGGYGPVYRCELDCTQVAIKVLKPDAAQGREQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDECLFPRGKSRPPLPWQLRFQIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQLVTAKPPMGLTHHVGRSIEKGTFAEMLDPAIQDWPLEQALHFAKLSLGCAEMRRKDRPDLGKVVLPELNKLRLFAEQNMSPMMMFGLRSTGGGGAAGYVPRNSNSSIHSGLSSSTQGMSEVSGFSGYESRSSTSSLGRI
Length799
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.396
Instability index53.33
Isoelectric point7.81
Molecular weight88204.79
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23768
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     130.68|      29|      30|     263|     292|       1
---------------------------------------------------------------------------
  178-  202 (39.83/19.21)	..PR.NQLQPQQQ....QPHPQTMP..SPERFSD
  263-  292 (52.18/30.99)	GRPSvDRMFPTMY....EDMDSAMSGIAPGRFSD
  295-  324 (38.67/18.44)	GRSS....FASSYssqsQGMDDCYSFSSQSRLSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.96|      21|      23|     389|     409|       2
---------------------------------------------------------------------------
  357-  378 (26.31/12.50)	TA..KQKAMELkRLKVEEQKKLEE
  389-  409 (34.29/18.23)	AA..AASSMAL.MMEMEKEKIREE
  415-  434 (26.35/12.52)	AAleEQKRMSL...QMER.KIKPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     172.41|      56|     489|      88|     145|       4
---------------------------------------------------------------------------
   88-  145 (89.03/64.16)	QCK.EVLL.EDMDISKALID.....AIStnTIELLVLGAPSRSGLVRRFRTTDVPSTVSKGAPQF
  577-  639 (83.38/53.83)	QTKpEPLVhRDLKPGNILLDrnyvsKIS..DVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.01|      17|      23|     217|     238|       5
---------------------------------------------------------------------------
  217-  238 (22.12/26.00)	RAaphGSHGARPTMMDEDdiIS
  242-  258 (28.89/15.42)	RA...GKTYESSKLLDSD..IS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23768 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IAAASPRNQLQPQQQQPHPQTMPSPERFSDPQLPRNYPPRPTSERAAPHGSHGARPTMMDEDDIISPFTRA
173
243










Molecular Recognition Features






MoRF SequenceStartStop




NANANA