<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23751
Description |
Mediator of RNA polymerase II transcription subunit 15a isoform B |
Sequence | MDSNNWRPNQGTNPTMDTSDWRAQLPTDSRQRIVNKIMDTLKKHLPASGPDGLHELRKIAQRFEDKIYTAATSQPDYLRKISLKMLTMETKSQNTLANNMPPNQVGPSNKPPDQGLVLQSQVHNLGQQHSIPLSSQLQPHQQLVSQNVQNNVASQPNLPPVSSLAQTTSQNIVQNSNMQNITGPNSVGSTISQNSNLQNMFPGSQRQMPGRQQIVPPQNSPQYLYQQQRLKQKQLQSQMQQQQQNLLQPNQLQSSQQSIMQTSSVMQPSMMQTSSLSSIPQNQQSTNVQQSMQSMPQQHSQVIRHQQQQTSIVHQQQIPVTQQPSLPAQQQQQLMGHQPNTTNMQHAQMLGQQNNVGDIQQPQRMLSQQSNLTNLQQRQQLINQQNNPANIHQQLGNNGPGLQQQHLLGHESGNADMQTSHHSAHMLQQPKVPMQQQSQQSTSNLLLPHSQQSQPLGSQQQLMPQIHTQSAQLQQQLGLPQQLNPSQRDMQQRIQASGSLLQQQNVLDQQKQLYQTQRTLPETSATSLDSTTQTAQPSGADWQEEVYQKLQTMKESYLPEMNEMYQKIANKLHQHDSLPQQPKLDQIDKLRAYKSMLERMMALLQIPKNNILPNFKEKLGSYEKQIINLLINSNRPRKGMNSVQAGHHPPTHMSSMQQPQSQVTQVHSHENQMNSQLQSTNLQGSVPTMQQNNIASMQHNSLSGVSTGQQNMMNSMQPGTNLDSVHGNSVNSLQQIPMNSLQQNPVSTAQQTNINSLPSQGGANVIQPNALQSGSSALQHQLKHQQEQQMLQSQQLKQQYQRQQLMQRQLLQQQQQLHHPGKPQLSSQLQTHQMPQLHQMNDINDIKMRQGMGVKSGVFQQHLTSGQHSTYSHQQLKQGSAFPVSSPQLLQAASPQIQQHSSPQVDQQNHLPSKTKVTTPLQSSNSPFVGPTPSPPLAPSPMPGESEKSIPCVSSISNAANIGLQQTGGAVAPAQSLAIGTPGISASPLLAEFSCPDGAHGNALAATSGKSTVTEQPLERLINAVKSISRKALSAAVMDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVSMTNCRLQARNFIAQDGSNGIKRMKRYTSAIPLNVVSSPGSMNDSIKQLTASETSDLESTATSSVKKPKIESPIQPLHLLVPANYPNCSPILLDKFPVESSKENEDLSVKARSKFSTSLRSLSQPMSLGEIARTWDVCARSVISEHAQQSGGGSFSSKYGTWENCLTTN |
Length | 1237 |
Position | Tail |
Organism | Glycine soja (Wild soybean) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade>
NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine>
Glycine subgen. Soja.
|
Aromaticity | 0.03 |
Grand average of hydropathy | -0.806 |
Instability index | 64.64 |
Isoelectric point | 9.51 |
Molecular weight | 136504.32 |
Publications | |
Function
Annotated function |
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GO - Cellular Component | nucleus GO:0005634 IEA:UniProtKB-SubCell
|
GO - Biological Function | chromatin DNA binding GO:0031490 IEA:InterPro
transcription coactivator activity GO:0003713 IEA:InterPro
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GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP23751
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
12| 876.00| 76| 76| 330| 405| 1
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81- 142 (72.55/16.53) I..........SLKML..................TMETK.....SQNTLA..NN.............M.......P...PN.QVGPSN....K.PpDQ....G.................L...VL.......QSQVHNL....GQ..............Q.HSIP..L.SSQL...QP..HQ...Q
147- 238 (69.57/15.47) N..........VQNNV..................ASQPN.....LPPVSS.lAQ.............T..TS...QnivQNsNMQNIT....G.P.NS....V..............gstI...SQ.......NSNLQNMfpgsQR....qmpgRQQIVPP.QNSPQYL.YQQQRLKQKQLQS...Q
242- 324 (74.03/17.05) Q..........QQNLL....................QPN.......QLQS..SQqsimqtssvmqpsM..M....Q...TS.SLSSI.......P.Q...........................NQ.......QS..TNV....QQsmqsmpqqHSQVIRH.QQQQTSIvHQQQ...IPVTQQ...P
330- 405 (146.62/42.70) Q..........QQQLM..................GHQPN.....TTNMQH..AQ.............M..LG...Q...QN.NVGDIQ....Q.P.QR....M.................L...SQ.......QSNLTNL....QQ........RQQLINQ.QNNPANI.HQQLGNNGPGLQQ...Q
411- 482 (82.39/20.00) E..........S......................GNADM.....QTSHHS..AH.............M..L....Q...QP.KVPMQQ....Q.S.QQstsnL.................LlphSQ.......QSQ..PL....GS........QQQLMPQiHTQSAQL.QQQL.....GLPQ...Q
483- 548 (49.63/ 8.43) L..........N.........................PS.....QRDMQQ.rIQ.............A..SGsllQ...QQ.NVLDQQkqlyQ.T.QR....T.................L...PE.......TSA.TSL....DS........T....TQ.TAQPS..........GADWQEevyQ
554- 621 (50.41/ 8.70) K..........ESYL......................PE.....MNEMYQkiAN.............K..LH...Q...HD.SLP..Q....Q.P.K.......................L...DQidklrayKSMLERM....MA........LLQ.IPK.NNILPNF.KEKLGS...........
622- 692 (65.26/13.95) Y..........EKQIInllinsnrprkgmnsvqaGHHP......PTHM....SS.............M...................Q....Q.P......................................QSQVTQV....HS........HENQMNS.QLQSTN.....LQGSVPTMQQ...N
698- 760 (62.29/12.90) QhnslsgvstgQQNMM.................nSMQPG......TNLDS..VH.................G........N.SVNSLQ....QiP.........................................MNSL....QQ..................NPVST.AQQTNINS..LPS...Q
761- 814 (66.38/14.35) G..........GANVI....................QPNalqsgSSALQH...Q.............L..KH...Q...QE...............QQ....M.................L....Q.......SQQLKQQ....YQ........RQQLMQR.Q...............L.LQQ...Q
815- 899 (80.31/19.26) Q..........Q..L....................HHPG.kpqlSSQLQT..HQ.............MpqLH...Q...MN.DINDIK....M.R.QG....M.................G...VK...sgvfQQHLTSG....QH....stysHQQLKQG.SAFPVSS.PQLLQAASPQI.Q...Q
907- 984 (56.55/10.87) Q..........QNHLP..................SKTKV.....TTPLQS..SN.........................SP.FVGPTP....S.P.PL....ApspmpgeseksipcvssI...SN.......AANI.GL....QQ........TGGAV.....APA....QSLAIGTPGI......
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 63.95| 22| 25| 1085| 1106| 2
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1085- 1106 (37.91/27.89) GS..NGIKRM.KRYTSAIPLNVVSS
1108- 1132 (26.04/16.61) GSmnDSIKQLtASETSDLESTATSS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 43.06| 12| 19| 13| 31| 3
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13- 26 (20.42/25.30) NPTMDTsdWRAQLP
35- 46 (22.64/ 6.81) NKIMDT..LKKHLP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 84.32| 25| 26| 1179| 1204| 4
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1179- 1204 (39.46/25.88) ARSKFSTSLRSlSQPMSLGEIARTWD
1207- 1231 (44.86/25.50) ARSVISEHAQQ.SGGGSFSSKYGTWE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 52.87| 17| 52| 994| 1013| 5
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994- 1010 (30.04/32.15) S.CPDGAHGNALAATSGK
1014- 1031 (22.83/11.35) TeQPLERLINAVKSISRK
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 42.26| 14| 23| 1035| 1050| 6
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1035- 1050 (20.57/23.68) AAVMDigSVVSM.NDRI
1061- 1075 (21.69/15.50) AAVGE..DLVSMtNCRL
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