<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23730

Description U-box domain-containing protein 33 isoform B
SequenceMAVVSPVPATTQRMGSVRLLSDAGGEILEEPNPRVVDQPIYVAVTKEVKESKLNLIWAIQTSGGKRICILYVHVRATMIPLLGGKFPASTLKEEQVEAYWEEERQGMHGILDEYLCICQRMGVRAEKLHIEMDSIEKGILELISQHGIRKLVMGAASDKYYNRRMMDLKSKKAVSVCKQAPASCHIQFVCKGHLIHTRDRSSDEGNAEVASPLVQQVPNSLKSLRSLSITLGQDCQANITNPALELFRRVRSANDGHGASFMAVSSPEDTEGLSTPRDRMGTEVSSDESDRLSRMSPSGLSTCSDSAVELALTPSLINESSENALELTLSRLIIEDLHHSSPPSTLDGGMDDTTYDQLEQARAEAENATLNAYQETVRRMKAEKDAFEAIRKIKASESLYAEELNQRKMAEEKLRKEKEELENMKSLRDTVKEELRLALDQKASLESQIASTELMIKELEQKILSAVGLLQSYKNERDELQMQCDNALREAEELRKKQGEASGTHVPQLCSEFSFPEIKEATSNFNPSSKIGEGGYGSIFKGVLHHTEVAIKMLNSDSMQGPLEFQQEVDVLSKLRHPNLITLIGACPDSWALVYEYLPNGSLEDRLACKDNTPPLSWQARIRIAAELCSALIFLHSTKPHSVVHGDLKPSNILLDANLISKLSDFGICRILSNCESSGSNITEFWRTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITMEVKYALDTGKLKSLLDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLYSDVWRILDAMRVSSGGANSFGLSSEGLLQSPSYFICPIFQVNSFVNLCFFSSSKKLCPHAVVESPL
Length849
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.290
Instability index47.62
Isoelectric point5.54
Molecular weight94173.47
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23730
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.63|      18|     200|     627|     648|       1
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  627-  648 (30.55/30.73)	ELCsaliFLHSTK...PHSVVHGDL
  829-  849 (30.08/19.57)	NLC....FFSSSKklcPHAVVESPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.53|      15|      15|     304|     318|       2
---------------------------------------------------------------------------
  304-  318 (24.02/14.80)	SDSAVELALTPSLIN
  321-  335 (22.52/13.41)	SENALELTLSRLIIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     150.02|      38|     349|     191|     235|       4
---------------------------------------------------------------------------
  191-  228 (62.71/32.05)	KGHLIHTRDRSSDEGNAEVASPL.VQQVPNSLKSLRSLS
  541-  579 (59.53/29.83)	KGVLHHTEVAIKMLNSDSMQGPLeFQQEVDVLSKLRHPN
  600-  619 (27.78/15.71)	NGSL...EDRLACKDN...TPPL.SWQ............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.23|      21|     264|       1|      22|       6
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    1-   22 (33.66/22.89)	MAVVSP.....VPATTQRMGSvRLLSD
  262-  287 (32.58/17.72)	MAVSSPedtegLSTPRDRMGT.EVSSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.94|      26|     401|     344|     393|       7
---------------------------------------------------------------------------
   94-  127 (32.78/ 7.97)	EQVEAywEEErqgmHGILDEYLCICQRMgvRAEK
  359-  384 (44.16/32.25)	EQARA..EAE....NATLNAYQETVRRM..KAEK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23730 with Med32 domain of Kingdom Viridiplantae
Unable to open file!