<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23721

Description Pre-mRNA-processing protein 40B isoform D
SequenceMDFDSIAGEMRVDATTNWKEYTSPDGRKYYYNKITNESKWSVPEELKLARELVEKAIVSGARPEALLNSHPQPSPTPSAIEATPNADNSSLPSQGEPSSPVSVSPVVTTSISNLQSEMPSGPSPSPADAITGTKVDELEAPLNTVTPSDTSVGSDKAIVTDINTAVTPMNDVDNDSAQATLGSADGVSAEDKEDGKNDSIGEKSNDEAAETKAVEPEPPVYANKMEAKDAFKALLESVNVGSDWTWDRSMRLIINDKRYGALKTLGERKQAFNEYLNQRKKQEAEEKRMKQKKAREDFKKMLEESTDLTSSARWSKAVSIFENDERFKAVERDRDRRDMFESFLEELLNKERAKVQEERKRNIMEYKKFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLHDLEKEEEEQKKIQKEELRKTERKNREEFRKLMEEHIASGILTAKTHWRDYYTKVKDLHAYVAVASNTSGSTPKDLFEDVAEELEKQYHEEKSRIKDTVKLAKITLSSTWAFEDFKSALSKAISTPPISDFNLKLVFDELLERAKEKEEKEAKKRKRLSDDFFHLLHSTKDITVSLKWEDCRPHVEDSQEFRSIGDESLCKEVFEEYIAQLKEEAKESERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKLQSPEHEMDKGKTKKSHGHGSDRKKSRRHSSGHESDEGRHKRHKRDHCREGDLEDGEFGDDHVDRC
Length770
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.226
Instability index48.24
Isoelectric point5.79
Molecular weight88814.55
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23721
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.49|      16|      18|     630|     645|       1
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  623-  638 (21.31/ 7.85)	KEEAKESERKRKEERA
  639-  654 (24.83/10.57)	KKEKDREERERRKGKQ
  688-  703 (20.35/ 7.11)	SKENKRSEDDNRKQRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.04|      17|      18|     143|     160|       2
---------------------------------------------------------------------------
  143-  160 (24.88/19.53)	NT.VTPSDtSVG...SDKAIVT
  163-  180 (22.45/12.28)	NTaVTPMN.DVD...NDSAQAT
  192-  211 (18.71/ 8.93)	KE.DGKND.SIGeksNDEAAET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     413.11|      65|      65|     212|     276|       3
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  212-  274 (90.28/43.53)	.............KAVEPEPPVYANKMEAKDAFKALL.ESV.N.VGSD.WT....WDRSMRLIIND.KRYGAL..KTLGE.RKQA.......................FNE
  275-  342 (89.18/42.93)	YL........nqrKKQEAEEKRMKQK.KAREDFKKMLeEST.D.LTSS.AR....WSKAVSIFEND.ERFKAV..ERDRD.RRDM.......................FES
  343-  409 (66.92/30.57)	FLeellnkerakvQ...EERK..RNIME....YKKFL.ESC.DfIKAS.TQ....WRKVQDRLEAD.ERCSRL..EKI.D.RLEI.......................FQD
  410-  490 (58.75/26.04)	YL.hdlekeeeeqKKIQKE.ELRKTERKNREEFRKLM.EE..H.IASGiLTakthW.RDYYTKVKDlHAYVAVasNTSGStPKDL.......................FED
  492-  550 (29.37/ 9.74)	..............AEELEKQYHEEKSRIKDTVK..L.AKI.T.LSST.WA....FE............................dfksalskaistppisdfnlklvFDE
  551-  617 (78.62/37.07)	LL.........erAKEKEEKEAKKRK.RLSDDFFHLL.HSTkD.ITVS.LK....WE.DCRPHVEDsQEFRSI..GDESL.CKEV.......................FEE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.76|      22|      47|      71|      92|       4
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   71-   92 (41.60/23.83)	PQ.PSPTPS.AIEATP..NADNSSLP
   95-  115 (24.85/11.71)	GE.PS...S.PVSVSPvvTTSISNLQ
  119-  141 (27.30/13.49)	PSgPSPSPAdAITGT...KVDELEAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.22|      30|      74|     655|     684|       5
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  655-  684 (49.85/24.72)	RKEKEGGRERGKDEAHKKDKADSDSMELTE
  718-  740 (33.75/14.33)	KKSHGHGSDRKKSRRHSSGH.ESD......
  742-  761 (28.61/11.02)	..........GRHKRHKRDHCREGDLEDGE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23721 with Med35 domain of Kingdom Viridiplantae
Unable to open file!