<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23719

Description Pre-mRNA-processing protein 40B isoform C
SequenceMANNPQYPGLQPLRPPIAGSLDPPRNFVPPMPVQFRPVVPTQQSQQFISMPSQHYQHQPVGPGGVPLIGVGMPPQNQRSQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNMHIPSESMMHQPDSQVHSQAPNGYTPGLGGPAMPLSASYTFAPSAYGQVQTNFSSTGQFQPVPQIHALTGSSSQSITTGATLQSNGGQPSVTTVMPSATIAQPQLAKNGPTDWIEHTSATGRTFYYNKKTKVSSWEKPFELMTPIERVDATTNWKEYTSPDGRKYYYNKITNESKWSVPEELKLARELVEKAIVSGARPEALLNSHPQPSPTPSAIEATPNADNSSLPSQGEPSSPVSVSPVVTTSISNLQSEMPSGPSPSPADAITGTKVDELEAPLNTVTPSDTSVGSDKAIVTDINTAVTPMNDVDNDSAQATLGSADGVSAEDKEDGKNDSIGEKSNDEAAETKAVEPEPPVYANKMEAKDAFKALLESVNVGSDWTWDRSMRLIINDKRYGALKTLGERKQAFNEYLNQRKKQEAEEKRMKQKKAREDFKKMLEESTDLTSSARWSKAVSIFENDERFKAVERDRDRRDMFESFLEELLNKERAKVQEERKRNIMEYKKFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLHDLEKEEEEQKKIQKEELRKTERKNREEFRKLMEEHIASGILTAKTHWRDYYTKVKDLHAYVAVASNTSGSTPKDLFEDVAEELEKQYHEEKSRIKDTVKLAKITLSSTWAFEDFKSALSKAISTPPISDFNLKLVFDELLERAKEKEEKEAKKRKRLSDDFFHLLHSTKDITVSLKWEDCRPHVEDSQEFRSIGDESLCKEVFEEYIAQLKEEAKESERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKLQSPEHEMDKGKTKKSHGHGSDRKKSRRHSSGHESDEGRHKRHKRDHCREGDLEDGEFGDDHVDRWFCTEEFVTRMKVDLDSGLRLEHNVLREIQK
Length1047
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.053
Instability index58.20
Isoelectric point6.27
Molecular weight119054.49
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23719
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     287.05|      61|      73|      11|      83|       1
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   11-   62 (96.40/41.57)	........................QPLRPPIAGSLDP.......PRNFVPPMPVQ....FRPVVPTQQSQQFISMPSQHYQHQP......VGP
   63-  132 (81.78/52.96)	GG.VPliGVGMPpqnqrsqfsqpiQQLPPRPSPQLPP.......PSQAI.PMPVA.....RP.........NMHIPSESMMHQPdsqvhsQAP
  133-  174 (58.59/24.08)	NGyTP..GLGGP......................................AMPLSasytFAPSAYGQVQTNF....SSTGQFQP......V.P
  319-  367 (50.27/17.13)	........................QPSPTPSAIEATPnadnsslPSQGEPSSPVS....VSPVVTTSISNLQSEMPS................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     509.63|      66|      66|     538|     603|       2
---------------------------------------------------------------------------
  473-  529 (68.18/37.50)	.........EAK.DAFKALL.E...SVNVGSDWTW.........DRSMRLII...NDKRYGALKTLGE...RKQAFNEYL......N...QRKKQ
  538-  603 (103.48/60.82)	Q.......KKAR.EDFKKMLEE...STDLTSSARW.........SKAVSIFE...NDERFKAVERDRD...RRDMFESFLEELLNKE...RAKVQ
  606-  672 (83.13/47.37)	R.......KRNI.MEYKKFLES...CDFIKASTQW.........RKVQDRLE...ADERCSRLEK.ID...RLEIFQDYLHD.LEKEeeeQKKIQ
  673-  747 (65.85/35.97)	KeelrkteRKNR.EEFRKLMEEhiaSGILTAKTHW.........RDYYTKVK...DLHAYVAVASNTSgstPKDLFEDVAEEL...E...K.QYH
  748-  805 (45.47/22.50)	E.......EKSRiKDTVK.L......AKITLSSTWafedfksalSKAISTPP..iSDFNLKLV............FD....ELL..E...RAKEK
  813-  874 (79.23/44.80)	R.......KRLS.DDFFHLLHS...TKDITVSLKW.........EDCRPHVE...DSQEFRSIGDESL...CKEVFEEYIAQL..KE...EAK..
  901-  965 (64.29/34.93)	Q.......RKEK.EGGRERGKD...EAHKKDKAD..........SDSMELTEiqtSKENKRSEDDNRK...QRKKLQS.PEHEMDKG...KTK..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.20|      19|      19|     389|     407|       3
---------------------------------------------------------------------------
  389-  407 (31.37/18.42)	LNT.VTPSDTSVGSDKAIVT
  409-  427 (25.52/13.62)	INTaVTPMN.DVDNDSAQAT
  431-  447 (19.31/ 8.52)	ADG.VSAEDKEDGKNDSI..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.92|      18|      19|     255|     272|       4
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  219-  236 (20.66/ 7.71)	.NGPTD...W.IEHTSATgRTFY
  237-  258 (21.52/ 8.32)	YNKKTKvssWeKPFELMT.PIER
  259-  274 (27.73/12.72)	VDATTN...W.KEYTSPD.G..R
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23719 with Med35 domain of Kingdom Viridiplantae
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