<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23717
Description |
Pre-mRNA-processing protein 40B isoform G |
Sequence | MDFDSIAGEMRVDATTNWKEYTSPDGRKYYYNKITNESKWSVPEELKLARELVEKAIVSGARPEALLNSHPQPSPTPSAIEATPNADNSSLPSQGEPSSPVSVSPVVTTSISNLQSEMPSGPSPSPADAITGTKVDELEAPLNTVTPSDTSVGSDKAIVTDINTAVTPMNDVDNDSAQATLGSADGVSAEDKEDGKNDSIGEKSNDEAAETKAVEPEPPVYANKMEAKDAFKALLESVNVGSDWTWDRSMRLIINDKRYGALKTLGERKQAFNEYLNQRKKQEAEEKRMKQKKAREDFKKMLEESTDLTSSARWSKAVSIFENDERFKAVERDRDRRDMFESFLEELLNKERAKVQEERKRNIMEYKKFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLHDLEKEEEEQKKIQKEELRKTERKNREEFRKLMEEHIASGILTAKTHWRDYYTKVKDLHAYVAVASNTSGSTPKDLFEDVAEELEKQYHEEKSRIKDTVKLAKITLSSTWAFEDFKSALSKAISTPPISDFNLKLVFDELLERAKEKEEKEAKKRKRLSDDFFHLLHSTKDITVSLKWEDCRPHVEDSQEFRSIGDESLCKEVFEEYIAQLKEEAKESERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKLQSPEHEMDKGKTKKSHGHGSDRKKSRRHSSGHESDEGRHKRHKRDHCREGDLEDGEFGDDHVDRW |
Length | 770 |
Position | Unknown |
Organism | Glycine soja (Wild soybean) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade>
NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine>
Glycine subgen. Soja.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -1.231 |
Instability index | 48.98 |
Isoelectric point | 5.79 |
Molecular weight | 88897.62 |
Publications | |
Function
Annotated function |
|
GO - Cellular Component | |
GO - Biological Function | |
GO - Biological Process | mRNA cis splicing, via spliceosome GO:0045292 IEA:InterPro
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Interaction
Repeat regions
Repeats |
>MDP23717
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 66.49| 16| 18| 630| 645| 1
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623- 638 (21.31/ 7.87) KEEAKESERKRKEERA
639- 654 (24.83/10.61) KKEKDREERERRKGKQ
688- 703 (20.35/ 7.13) SKENKRSEDDNRKQRK
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 66.04| 17| 18| 143| 160| 2
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143- 160 (24.88/20.79) NT.VTPSDtSVG...SDKAIVT
163- 180 (22.45/12.98) NTaVTPMN.DVD...NDSAQAT
192- 211 (18.71/ 9.38) KE.DGKND.SIGeksNDEAAET
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
6| 413.11| 65| 65| 212| 276| 3
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212- 274 (90.28/48.89) .............KAVEPEPPVYANKMEAKDAFKALL.ESV.N.VGSD.WT....WDRSMRLIIND.KRYGAL..KTLGE.RKQA.......................FNE
275- 342 (89.18/48.21) YL........nqrKKQEAEEKRMKQK.KAREDFKKMLeEST.D.LTSS.AR....WSKAVSIFEND.ERFKAV..ERDRD.RRDM.......................FES
343- 409 (66.92/34.31) FLeellnkerakvQ...EERK..RNIME....YKKFL.ESC.DfIKAS.TQ....WRKVQDRLEAD.ERCSRL..EKI.D.RLEI.......................FQD
410- 490 (58.75/29.21) YL.hdlekeeeeqKKIQKE.ELRKTERKNREEFRKLM.EE..H.IASGiLTakthW.RDYYTKVKDlHAYVAVasNTSGStPKDL.......................FED
492- 550 (29.37/10.87) ..............AEELEKQYHEEKSRIKDTVK..L.AKI.T.LSST.WA....FE............................dfksalskaistppisdfnlklvFDE
551- 617 (78.62/41.62) LL.........erAKEKEEKEAKKRK.RLSDDFFHLL.HSTkD.ITVS.LK....WE.DCRPHVEDsQEFRSI..GDESL.CKEV.......................FEE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 93.76| 22| 47| 71| 92| 4
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71- 92 (41.60/27.70) PQ.PSPTPS.AIEATP..NADNSSLP
95- 115 (24.85/13.65) GE.PS...S.PVSVSPvvTTSISNLQ
119- 141 (27.30/15.70) PSgPSPSPAdAITGT...KVDELEAP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 112.22| 30| 74| 655| 684| 5
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655- 684 (49.85/24.51) RKEKEGGRERGKDEAHKKDKADSDSMELTE
718- 740 (33.75/14.18) KKSHGHGSDRKKSRRHSSGH.ESD......
742- 761 (28.61/10.88) ..........GRHKRHKRDHCREGDLEDGE
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