<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23716

Description Pre-mRNA-processing protein 40B isoform B
SequenceMPSGPSPSPADAITGTKVDELEAPLNTVTPSDTSVGSDKAIVTDINTAVTPMNDVDNDSAQATLGSADGVSAEDKEDGKNDSIGEKSNDEAAETKAVEPEPPVYANKMEAKDAFKALLESVNVGSDWTWDRSMRLIINDKRYGALKTLGERKQAFNEYLNQRKKQEAEEKRMKQKKAREDFKKMLEESTDLTSSARWSKAVSIFENDERFKAVERDRDRRDMFESFLEELLNKERAKVQEERKRNIMEYKKFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLHDLEKEEEEQKKIQKEELRKTERKNREEFRKLMEEHIASGILTAKTHWRDYYTKVKDLHAYVAVASNTSGSTPKDLFEDVAEELEKQYHEEKSRIKDTVKLAKITLSSTWAFEDFKSALSKAISTPPISDFNLKLVFDELLERAKEKEEKEAKKRKRLSDDFFHLLHSTKDITVSLKWEDCRPHVEDSQEFRSIGDESLCKEVFEEYIAQLKEEAKESERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKLQSPEHEMDKGKTKKSHGHGSDRKKSRRHSSGHESDEGRHKRHKRDHCREGDLEDGEFGDDHVDRW
Length653
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.332
Instability index46.67
Isoelectric point6.05
Molecular weight76192.78
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23716
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     461.77|      65|      65|      95|     159|       1
---------------------------------------------------------------------------
    5-   83 (41.03/20.24)	....PSPsPADAITGTKVDELEAPL.NTVtpsdtS.VGSD.KaivtdinT....AVTPMNDVDND....SAQ..ATLGsadgvsaeD.KEDG.......................KNDSI
   95-  159 (101.80/62.70)	KAVEPEP.PVYANKMEAKDAFKALL.ESV.....N.VGSD.W.......T....WDRSMRLIIND.KRYGAL..KTLG........E.RKQA.......................FNEYL
  163-  227 (88.91/53.70)	KKQEAEE.KRMKQK.KAREDFKKMLeEST.....D.LTSS.A.......R....WSKAVSIFEND.ERFKAV..ERDR........D.RRDM.......................FESFL
  238-  294 (69.51/40.14)	..VQEER.K..RNIME....YKKFL.ESC.....DfIKAS.T.......Q....WRKVQDRLEAD.ERCSRL..EKI.........D.RLEI.......................FQDYL
  305-  373 (54.70/29.79)	KKIQKE..ELRKTERKNREEFRKLM.EE......H.IASGiL.......TakthW.RDYYTKVKDlHAYVAVasNTSG........StPKDL.......................FED..
  375-  435 (28.67/11.61)	.AEELEK.QYHEEKSRIKDTVK..L.AKI.....T.LSST.W.......A....FE....................................dfksalskaistppisdfnlklvFDELL
  438-  502 (77.15/45.48)	AKEKEEK.EAKKRK.RLSDDFFHLL.HST....kD.ITVS.L.......K....WEDCRPHVEDS.QEFRSIgdESL...........CKEV.......................FEEYI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     172.61|      43|      46|     518|     561|       2
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  518-  561 (65.63/26.64)	EERAKKEKDREERERRKgKQRKE.KEGGRERGKDEAHKKDKADSD
  567-  609 (64.75/23.19)	EIQTSKENKRSEDDNRK..QRKKlQSPEHEMDKGKTKKSHGHGSD
  614-  644 (42.23/12.85)	RRHSSGHESDEGRHKRH.KRDHC.REGDLEDGE............
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23716 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAKESERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKLQSPEHEMDKGKTKKSHGHGSDRKKSRRHSSGHESDEGRHKRHKRDHCREGDLEDGEFGDDHVDRW
2) MPSGPSPSPADAITGTKVDELEAPLNTVTPSDTSVGSDKAIVTDINTAVTPMNDVDNDSAQATLGSADGVSAEDKEDGKNDSIGEKSNDEAAETKAVEPEPPVYANKME
508
1
653
109










Molecular Recognition Features






MoRF SequenceStartStop




NANANA