<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23701

Description Mediator of RNA polymerase II transcription subunit 16 isoform B
SequenceMNQIAAIKDPEEGSEKKKKSNEAISGEEKKEDPMEQEMESLTPATVFCIRLKQPKSNLLYKMSVPEICRNFSAVSWCGKLNAIACASETCARIPSSTGNPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTCCPRALLVANFHGRVTIWTQPSQGQANLALDASCWLREHEWRQDIAVVTKWLSGVSLYRWLSSKPSGPANSRSTFEEKFLSQQCQTSARWPNFLCVCSVLSSGSVQLHWSQWPPQNATPPKWFCTSKGPLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVMPGPGNGFQVIPRTSTNNGVPPPLSSPNWTGFAPLAAYLFSWQDHLLSEEKQGKNQTNQNLGDSIPLNCSPVSNFSAYVSPETAAQTAATTTWGSGVTAVAFDPTCGGSVIAVVIAEGQYMSPYDPDEGPSITGWRVQLWESSLQHVVLHPIFGNPTSSMGGQPPMQTVWQTKVDLSIPPTNDFKNHQAPAVGMNTDIQKVSEFGFDKSKRVNFDPFDLPSDVRALARIVYSPHGGEIAIAFLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDPSKDQTILKIIRVLPPAIPTSQVKTNSSNWERAIAERFWWSLLVGVNWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSAQHRQQYCPSLDRIKCRLLEGANAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQVSSETLTSIDPEAVAVEPALVPCVQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGTGNNRNVVASPAQCSATPATSQGGQNGTTSSSGSTQMQAWVQGAIAKISSTTDGVSNPVPNPPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRYAGGVQRTADTNLQKPQPNASVPGKVEEIAKPVSTVVRPDDGQAGRVSQLVPASKGGEEPSPGRSRIGTGNAGLGYTYEEVKVLFLVLMDLCRRTAGLQHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEAALGPHMQVTFCFPISKSVFLADKQIHDFENKM
Length1078
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.08
Grand average of hydropathy-0.136
Instability index43.38
Isoelectric point6.28
Molecular weight116594.06
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23701
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     978.75|     214|     420|     223|     438|       1
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   70-  254 (231.77/111.14)	NFSAVSW.CGKLNAIACA..SETCA....RIPSSTGnppfwiP.....IHIV.I..P.ERPTECAVFNV.....IaDSPRDSVQFIEWSPTC.......CPRALLVANF.......................................HGR..........V..............TIWTQ..PSqgqANLALDAScwlreHEWRQDIAVVTKWLSGVSLYRwLSSKPSGPANSRSTFEEKFLS.......................................qqCQ........TSARWPNFLCVCSVLSSGSVQLHwsQWPPQ
  255-  438 (307.37/143.15)	NATPPKWFCTSKGPLGCG.PSGIMAGD..AIITDSG......A.....MHVAGV..PIVNPSTIVVWEV.....M.PGPGNGFQVIPRTSTN.....NGVPPPLSSPNWTGFAPLAAYLFSWQD...H..............LLSEEKQGKNQTNQNLGDSI..............PLNCS..PV...SNFSAYVS.....PETAAQTAATTTWGSGVTAVA.FDPTCGGSVIAVVIAEGQYMSPYDPDEGPS........................................................................
  457-  675 (214.16/97.81)	............HPIFGN.PTSSMGGQ.................................PPMQTVWQTkvdlsI.P.PTNDFK..NHQAPA.....VGMNTDIQKVSEFGFDKSKRVNFDPFD..................LPSDVRALARIVYSPHGGEIaiaflrggvhifsgP.NFA..PV...DNYQISVG.....SAIAAPAFSSTSCCS..ASVW.HDPSKDQTILKII....RVLPPAIPTS...qvktnssnweraiaerfwwsllvgvnwwdavgCT........QSAAEDGIVSLNSVIAVLDADFH..SLP..
  676-  932 (225.45/103.35)	SAQHRQQYCPSLDRIKCRlLEGANAQEvrAMVLDMQ......ArllldMLGKGIesALINPSALV...........PDP...WQVSSETLTSidpeaVAVEPAL.VP......CVQAYVDSVLDlasHfitrlrryasfcrtLASHAVTAGTGNNRNVVAS...............PAQCSatPA...TSQGGQNG.....TTSSSGSTQMQAWVQGAIA.K.ISSTTDGVSNPV.........PNPPISGPS..sfmpisintgtfpgtpavrligdchflhrlCQlllfcfffRRAQQPRY..AGGVQRTADTNL...QKPQP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23701 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MNQIAAIKDPEEGSEKKKKSNEAISGEEKKEDPMEQE
1
37










Molecular Recognition Features






MoRF SequenceStartStop




1) MNQIAAI
1
7