<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23696

Description Mediator of RNA polymerase II transcription subunit 33A isoform B
SequenceMLGLWGMECVAEMTKVAQQKGSDPLLWAVQMYSNLNSAGESLPSLQLAEFLVSYICWDNNVPILWKFLEKALTLQIVPPMLLLALLSVRVIPCRHVQPAAYRLYLELVKRHAFELKSQINRPDYQKVMKSIDAVLHLSNIFGMPQSEPGILVVEFIFSIVWQLLDASLDDEGLLEFTPDKKSRWATLYHDMELDRHDNYSEQRTEHHEKLQNANTLMAVEMIGQFLQDKISSRLLYLARQNLPAHWLSFTQRLQLLGANSLALRKSRTLSPEALLQLTSDSCMVLSRECKTNSQKKFQTVMSFEYLSSSASLCHGASHSALWIPLDLVLEDSMDGYQVSATSAIETISGLIKTLRAINGTSWHDTFLGLWLATLRLVQRERDPIDGPMPHLETRLCMLLCIIPLVVGDLIEEEEERTPVDEKDNGPTGCWKEKKVAGKCRDDLVSSLQVLGDYQSLLTPPQPVLAAANQAAAKAMLFVSGITIGSAYFDCLNMTEMPVDCSGNMRHLIVEACIARNLLDTSAYLWPGYVNGRINQIPQCMPAQVPGWSSFMKGTPLTSVMVNALVSSPATSLAELEKIFEIAIEGSEDEKISAAAILCGASLICGWNIQEHTVHFILRLLSPPVPAENTEGNNYLINYAPILNVLFVGIASVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNISWTLTSGEEISAHAVFSNAFILLLKLWRFNRPPLEYGIGDVPTVGSQLTPEYLLLVRNSHLMSAGNIHKDRNRRRLSEIASLSSPNSVFVDSFPKLKVWYRQHQACIASTLSGLVHGTPFHQIVEGLLNMMFRKINRGSQTTITSGSSSSSGPANEDASIGPKLPAWDILEAIPFVVDAALTACAHGRLSPRELATGLKDLADFLPASLATIISYFSAEVTRGVWKPVFMNGTDWPSPAANLLNVEGQIRKILAATGVDVPSLASGFPIFMTLNFIYFLKS
Length966
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.08
Grand average of hydropathy0.120
Instability index45.91
Isoelectric point5.74
Molecular weight106786.39
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23696
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     176.80|      47|     362|     513|     564|       1
---------------------------------------------------------------------------
  513-  556 (62.57/52.09)	..................IARNLLDTSAYLwPGyVNGRINQIPQCMPAQVP..GWSS.FMKGTPL
  837-  860 (24.49/ 9.35)	....................................GPANEDASIGP.KLP..AWD..ILEAIPF
  861-  920 (51.49/28.17)	VVDAAltacahgrlspreLATGLKDLADFL.PA....SLATIISYFSAEVTrgVWKPvFMNGTDW
  924-  954 (38.25/26.90)	AANLL............................nVEGQIRKILAATGVDVP.....S.LASGFPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.07|      46|     103|      28|      78|       2
---------------------------------------------------------------------------
   28-   78 (70.53/58.24)	AVQMYSNLNSAGESLPSLQLAEFLVSyICWDnnvpILWKFLEKALTLQIVP
  133-  178 (80.53/50.61)	AVLHLSNIFGMPQSEPGILVVEFIFS.IVWQ....LLDASLDDEGLLEFTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.92|      18|     363|       2|      25|       3
---------------------------------------------------------------------------
    2-   25 (23.56/28.52)	LGLWgmecVAEMTKVaqQKGSDPL
  367-  384 (33.37/18.54)	LGLW....LATLRLV..QRERDPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.35|      18|     105|     589|     606|       4
---------------------------------------------------------------------------
  208-  225 (27.02/15.68)	EKLQNANT.LMAVEMIGQF
  228-  246 (24.31/13.36)	DKISSRLLyLARQNLPAHW
  589-  606 (31.02/19.10)	EKISAAAI.LCGASLICGW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.80|      41|     167|     456|     501|       5
---------------------------------------------------------------------------
  456-  501 (70.24/64.07)	LLTPPQPVLAA.ANQ.....AAAKAMLFVsgitiGSAYFDCLNMTEM....P.VDCS
  619-  670 (54.56/38.08)	LLSPPVPAENTeGNNylinyAPILNVLFV.....GIASVDCVQIFSLhglvPqLACS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     238.44|      75|     461|     269|     364|       6
---------------------------------------------------------------------------
  269-  364 (108.28/116.17)	LSPEALLQLTSDSCMVLSRECKTNSQKKFQTVMSFEylSSSASLCHGASHSALWipldlvledsmdgYQVSATSAIETISGLiktlraINGTSWHD
  733-  807 (130.16/88.88)	LTPEYLLLVRNSHLMSAGNIHKDRNRRRLSEIASLS..SPNSVFVDSFPKLKVW.............YRQHQACIASTLSGL......VHGTPFHQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23696 with Med33 domain of Kingdom Viridiplantae
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