<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23689

Description Pre-mRNA-processing protein 40C isoform F
SequenceMASPAWLPQESQPPVSGETPLPMASSAHTTPSTAHAKLFNATAFVAPAPAPPFAYGMLQNVNASGSSQQSSTHPGMKSNSAVNPMVVQPPGVSLHAAPSFSYNIPQSGAIFSSNQQHAQSSTNMPDSVAQDVGKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSWMPTAMSFPVLPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSVPAMAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGTSTPSSSHQLRGTTALQTEVISGPADDKKKLNSVDTVNEDAANNDQLDAWTAHKTEAGIIYYYNAVTGESTYDKPAGFKGESHQVSAQPIPVSMMDLPGTDWRLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVSNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQNSPSALDLIKKKLQDSGTPVASSSIPAPSVQTGPESNGSKTVDSTAKGLQVDNNKDKAKDTNGDANVSDTSSDSEDEDNGPSKEECIIQFKEMLKERGVVPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKRLLDEASEDINYNTDYQTFRKKWRNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAASFKSMLKERGDISFNSRWSRVKENLRDDPRYKCVRHEDREVLFNEYISELKAAEHAAERETKAKMEEQDKLRERERELRKRKEREEQEMERVRLKIRRKDAVTLFQALLVETIKDPLVQIFCVWYGYIYYFHL
Length850
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-0.643
Instability index53.73
Isoelectric point7.66
Molecular weight92773.08
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23689
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     313.85|      66|      66|     644|     709|       1
---------------------------------------------------------------------------
  581-  640 (69.98/41.99)	....IIQFKEMLKE.RGVVPFS........KWEKelpkivfDPRFKAIPSYSARRSLFEHY.VKT.RAEEERKEK
  644-  709 (110.07/70.00)	QKAAIEGFKRLLDEASEDINYNTDYQTFRKKWRN.......DPRFEALDRKEQEHLLNERV.LPL.KKAAEEKAQ
  712-  775 (102.36/64.61)	RAAAAASFKSMLKERG.DISFNSRWSRVKENLRD.......DPRYKCVRHEDREVLFNEYI.SEL..KAAEHAAE
  777-  818 (31.44/15.06)	.................ETKAKMEEQ...DKLRE.......RER.ELRKRKEREEQEMERVrLKIrRKDA.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     192.08|      40|      40|      26|      65|       2
---------------------------------------------------------------------------
   26-   65 (70.90/33.99)	SAH.......TTPS.......TAHAKLFNATAFVAPAP......APPFAYGM.LQNVNASG
   71-  108 (46.26/19.47)	STH.........PG.......MKSNSAVNP..MVVQPPgvslhaAPSFSY.....NIPQSG
  187-  208 (32.60/11.42)	PGP.........PG.......LASS......AIISSNP......AAP...........STG
  210-  261 (42.32/17.14)	DSSpaallrpNMPTsaiasdpTAPQKGLPYPSVPAMA.......APP..QGLwLQPPQMSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.14|      17|      20|     124|     142|       4
---------------------------------------------------------------------------
  124-  142 (24.64/14.90)	MPDsvAQDVGKLSSASSIP
  154-  170 (36.50/17.54)	MPP..PSDPNYRPATSWMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.20|      19|      20|     410|     428|       5
---------------------------------------------------------------------------
  358-  376 (32.10/24.83)	WTAHK.TEAGIIYYYNAVTG
  410-  428 (35.24/28.09)	WRLVS.TSDGKKYYYNNRTK
  432-  451 (24.86/17.33)	WQIPNeVAELKKKQDGDVTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.24|      17|     376|       4|      22|      11
---------------------------------------------------------------------------
    4-   22 (26.13/19.46)	PAWLPQESQpPVSGEtPLP
  383-  399 (33.11/15.30)	PAGFKGESH.QVSAQ.PIP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23689 with Med35 domain of Kingdom Viridiplantae
Unable to open file!