<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23687

Description Pre-mRNA-processing protein 40C
SequenceMASPAWLPQESQPPVSGETPLPMASSAHTTPSTGKPTAPLRFLYDFNSSNVIPTESVKVTAHAKLFNATAFVAPAPAPPFAYGMLQNVNASGSSQQSSTHPGMKSNSAVNPMVVQPPGVSLHAAPSFSYNIPQSGAIFSSNQQHAQSSTNMPDSVAQDVGKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSWMPTAMSFPVLPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSVPAMAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGTSTPSSSHQLRGTTALQTEVISGPADDKKKLNSVDTVNEDAANNDQLDAWTAHKTEAGIIYYYNAVTGESTYDKPAGFKGESHQVSAQPIPVSMMDLPGTDWRLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVSNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQNSPSALDLIKKKLQDSGTPVASSSIPAPSVQTGPESNGSKTVDSTAKGLQVDNNKDKAKDTNGDANVSDTSSDSEDEDNGPSKEECIIQFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKRLLDEASEDINYNTDYQTFRKKWRNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAASFKSMLKERGDISFNSRWSRVKENLRDDPRYKCVRHEDREVLFNEYISELKAAEHAAERETKAKMEEQDKLRERERELRKRKEREEQEMERVRLKIRRKDAVTLFQALLVETIKDPLVSWTESKPKLEKDAQRRATNPDLDPLDTEKLFREHVKMLQERCAHEFRVLLAEVLTSDAASQETDDGKTVLNSWSTAKRLLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASHDSREEKHTDAEGRNYLESSKHPFESGRSYERR
Length979
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.761
Instability index54.98
Isoelectric point8.24
Molecular weight107490.95
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23687
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     314.72|      42|      42|     177|     218|       1
---------------------------------------------------------------------------
   27-   71 (33.80/ 9.42)	A.HTT..PSTG.KPTA.PLrflydfnS..SNVIPTES......VKVTAHAKLFNATAF...
   72-  107 (35.70/10.34)	...VA..PA....PAP.P.........faYGMLQNVN......ASGSSQQSSTHPGMKSNS
  108-  158 (38.14/11.53)	AVNPM..VVQ.....P.PGvslhaapS..FSYNIPQSgaifssNQQHAQSSTNMPDSVAQD
  159-  203 (55.47/19.96)	VGKLS..SASS.IPHSvPA.....htS..TSIMPPPS......DPNYRPATSWMPTAMSFP
  204-  246 (54.12/19.30)	VLPVM..PTQG.NPGP.PG....lasS..AIISSNPA......APSTGTDSS..PAALLRP
  269-  308 (51.19/17.88)	.VPAMaaPPQGlWLQP.PQ.......M..SGVLRPP..........YLQYPAPFPGPFPFP
  313-  359 (46.32/15.51)	ALPAV..PIP..DSQP.PG.vtpvgaA..GGTSTPSS......SHQLRGTTALQTEVISGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     355.35|      61|      61|     733|     793|       2
---------------------------------------------------------------------------
  610-  659 (42.94/26.94)	.............QFKAIpSYSARRSLFEHYVKTR...AEEERKEK.RAAqKAAIEGFKRLLDE.ASE
  666-  729 (71.74/51.02)	DYQTFRKKWRNDPRFEAL.DRKEQEHLLNERVLPL..kKAAEEKAQaMRA.AAAASFKSMLKERgDIS
  733-  793 (96.20/71.47)	RWSRVKENLRDDPRYKCV.RHEDREVLFNEYISEL...KAAEHAAE.RET.KAKMEEQDKLRER.ERE
  797-  855 (73.84/52.78)	RKEREEQEM.ERVRLK.I.RRKDAVTLFQALLVET...IKDPLVSW.TES.KPKLEKDAQRRAT.NPD
  906-  963 (70.62/50.09)	SWSTAKRLLKSDPRYNKV.PRKEREALWRRYAEDMlrrQKASHDSR.EEK.HTDAEGRNYL.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.82|      19|      20|     437|     455|       3
---------------------------------------------------------------------------
  385-  403 (36.39/28.30)	WTAHKTEAGIIYYYNAVTG
  437-  455 (36.43/28.34)	WRLVSTSDGKKYYYNNRTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.21|      23|     101|     468|     495|       4
---------------------------------------------------------------------------
  468-  491 (35.22/34.82)	LKKK..QDG....DVTKDHLMSvSNTNVLS
  515-  543 (28.99/12.69)	LKPSslQNSpsalDLIKKKLQD.SGTPVAS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23687 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DSGTPVASSSIPAPSVQTGPESNGSKTVDSTAKGLQVDNNKDKAKDTNGDANVSDTSSDSEDEDNGPSKEECI
2) EHAAERETKAKMEEQDKLRERERELRKRKERE
3) FSSNQQHAQSSTNMPDSVAQDVGKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSW
4) GMLQNVNASGSSQQSSTHPGMKSNSAVNPMVVQP
5) IPNEVAELKKKQDGDVTKDHLMSVSNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQNSPSALDLIKKKL
6) MASPAWLPQESQPPVSGETPLPMASSAHTTPSTG
7) PVLPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSVPAMAAPPQGLWLQPPQMS
8) RQKASHDSREEKHTDAEGRNYLESSKHPFE
9) VALPAVPIPDSQPPGVTPVGAAGGTSTPSSSHQLRGTTALQTEVISGPADDKKKLNSVDTVNEDAANNDQLDA
536
770
138
83
461
1
203
942
312
608
801
195
116
534
34
287
971
384










Molecular Recognition Features






MoRF SequenceStartStop




1) APLRFLYDFN
2) LIKKKL
38
529
47
534