<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23686

Description Pre-mRNA-processing protein 40C isoform A
SequenceMASPAWLPQESQPPVSGETPLPMASSAHTTPSTAHAKLFNATAFVAPAPAPPFAYGMLQNVNASGSSQQSSTHPGMKSNSAVNPMVVQPPGVSLHAAPSFSYNIPQSGAIFSSNQQHAQSSTNMPDSVAQDVGKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSWMPTAMSFPVLPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSVPAMAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGTSTPSSSHQLRGTTALQTEVISGPADDKKKLNSVDTVNEDAANNDQLDAWTAHKTEAGIIYYYNAVTGESTYDKPAGFKGESHQVSAQPIPVSMMDLPGTDWRLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVSNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQNSPSALDLIKKKLQDSGTPVASSSIPAPSVQTGPESNGSKTVDSTAKGLQVDNNKDKAKDTNGDANVSDTSSDSEDEDNGPSKEECIIQFKEMLKERGVVPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKRLLDEASEDINYNTDYQTFRKKWRNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAASFKSMLKERGDISFNSRWSRVKENLRDDPRYKCVRHEDREVLFNEYISELKAAEHAAERETKAKMEEQDKLRERERELRKRKEREEQEMERVRLKIRRKDAVTLFQALLVETIKDPLVSWTESKPKLEKDAQRRATNPDLDPLDTEKLFREHVKMLQERCAHEFRVLLAEVLTSDAASQETDDGKTVLNSWSTAKRLLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASHDSREEKHTDAEGRNYLESSKHPFESGRSYERR
Length980
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.773
Instability index54.40
Isoelectric point8.40
Molecular weight107943.65
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23686
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     443.91|      66|      66|     644|     709|       1
---------------------------------------------------------------------------
  581-  640 (71.98/41.94)	....IIQFKEMLKE..RG..VVP.......FSKWEKELPKIVFDPRFKAIPSYSARRS...LFEHYVKTRAEEERKEK
  644-  709 (102.58/63.05)	QKAAIEGFKRLLDEASED..INY.......NTDYQTFRKKWRNDPRFEALDRKEQEHL...LNERVLPLKKAAEEKAQ
  712-  772 (86.61/52.03)	RAAAAASFKSMLKERG.D..ISF.......NSRWSRVKENLRDDPRYKCVRHEDREVL...FNEYISEL.KAAEH...
  773-  812 (41.65/21.00)	..AAERETKAKMEE..QD.....................KLRERER.ELRKRKEREEQ...EMERV.RLK........
  815-  882 (66.14/37.90)	RKDAVTLFQALLVETIKDplVSWteskpklEKDAQ..RRA..TNPDLDPLD...TEKL...FREHVKMLQERCAHEFR
  887-  952 (74.95/43.99)	EVLTSDAASQETDDGKTV..LN..........SWSTAKRLLKSDPRYNKVPRKEREALwrrYAEDMLRRQKASHDSRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     243.07|      40|      40|      26|      65|       2
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   26-   65 (70.11/31.39)	SAHTTP.ST....AH..AKLFN...A............TAFVAPAP......APPF...........AYGM................LQ......NVNASG
   71-  108 (45.23/17.57)	STH..P.GM....KS..NSAVN...P..............MVVQPPgvslhaAPSF...........SY..........................NIPQSG
  120-  191 (32.11/10.27)	SSTNMPdSV....AQdvGKLSS...AssiphsvpahtsTSIMPPPS......DPNYrpatswmptamSFPV................LPvmptqgNPGPPG
  200-  261 (38.63/13.90)	SNPAAP.STgtdsSP..AALLRpnmP............TSAIASDP......TAP............QKGLpypsvpamaappqglwLQ......PPQMSG
  272-  308 (56.99/24.10)	APFPGP.FP....FP..ARGVA...L............PAVPIPDS......QPP..............GV................TP......VGAAGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.97|      26|     167|     319|     344|       3
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  319-  344 (43.50/28.47)	RGTTALQ.TEVISGP.ADD..KKKLNSVDT
  483-  512 (25.48/13.45)	RDAAALKpSSLQNSPsALDliKKKLQDSGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.20|      19|      20|     410|     428|       4
---------------------------------------------------------------------------
  358-  376 (32.10/19.40)	WTAHK.TEAGIIYYYNAVTG
  410-  428 (35.24/21.97)	WRLVS.TSDGKKYYYNNRTK
  432-  451 (24.86/13.47)	WQIPNeVAELKKKQDGDVTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.24|      17|     376|       4|      22|       5
---------------------------------------------------------------------------
    4-   22 (26.13/19.91)	PAWLPQESQpPVSGEtPLP
  383-  399 (33.11/15.68)	PAGFKGESH.QVSAQ.PIP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23686 with Med35 domain of Kingdom Viridiplantae
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