<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23683

Description Pre-mRNA-processing protein 40C isoform G
SequenceMASPAWLPQESQPPVSGETPLPMASSAHTTPSTAPAPAPPFAYGMLQNVNASGSSQQSSTHPGMKSNSAVNPMVVQPPGVSLHAAPSFSYNIPQSGAIFSSNQQHAQSSTNMPDSVAQDVGKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSWMPTAMSFPVLPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSVPAMAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGTSTPSSSHQLRGTTALQTEVISGPADDKKKLNSVDTVNEDAANNDQLDAWTAHKTEAGIIYYYNAVTGESTYDKPAGFKGESHQVSAQPIPVSMMDLPGTDWRLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVSNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQNSPSALDLIKKKLQDSGTPVASSSIPAPSVQTGPESNGSKTVDSTAKGLQVDNNKDKAKDTNGDANVSDTSSDSEDEDNGPSKEECIIQFKEMLKERGVVPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKRLLDEASEDINYNTDYQTFRKKWRNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAASFKSMLKERGDISFNSRWSRVKENLRDDPRYKCVRHEDREVLFNEYISELKAAEHAAERETKAKMEEQDKLRERERELRKRKEREEQEMERVRLKIRRKDAVTLFQALLVETIKDPLVQIFCVWYGYIYYFHL
Length838
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-0.663
Instability index54.56
Isoelectric point7.26
Molecular weight91501.62
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23683
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     308.61|      76|     133|     572|     648|       1
---------------------------------------------------------------------------
  573-  648 (126.11/76.45)	KEMLKERGVVPF.SKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKT.RAEEERKEKRAAQKAAIEGFKRLLDEASE
  650-  707 (69.42/37.96)	.........INYnTDYQTFRKKWRNDPRFEALDRKEQEHLLNERVLPL.KKAAEEKAQ.AMRAAAAASF.........
  708-  782 (113.08/63.64)	KSMLKERGDISFnSRWSRVKENLRDDPRYKCV.RHEDREVLFNEYISElKAAEHAAE.RET.KAKMEEQDKLRERERE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     248.15|      38|      40|      58|      95|       2
---------------------------------------------------------------------------
   58-   95 (67.87/27.66)	SSTHPG..MKSNSAVNP..MVVQPPGVS.LHAAPSFSYNIPQS
  100-  134 (36.87/11.73)	SSNQQH..AQSSTNMPD..SVAQDVG.K.LSSASSIPHSVP..
  135-  160 (32.48/ 9.47)	..AHT.....STS........IMPPPSD.PNYRPATSW.MPTA
  163-  195 (45.20/16.01)	FPVLPV..MPTQG..NP.....GPPGLA.SSAIISSNPAAPST
  197-  223 (26.51/ 6.40)	TDSSPAalLRPNMPTSA..IASDP.......TAP.......QK
  224-  261 (39.21/12.93)	GLPYPS..VPAMAA.PPqgLWLQPPQMSgVLRPPYLQYPAP..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.57|      37|      44|     482|     522|       5
---------------------------------------------------------------------------
  482-  522 (57.37/41.38)	QNSPSAL..DLIKKKLQDS.GtpvaSSSIPAPSVQTGPESNG.SK
  525-  565 (48.20/25.93)	DSTAKGLqvDNNKDKAKDTnG....DANVSDTSSDSEDEDNGpSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.67|      11|      34|     305|     315|       6
---------------------------------------------------------------------------
  305-  315 (19.27/12.45)	QLRGTTALQTE
  342-  352 (21.40/14.61)	QLDAWTAHKTE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.02|      20|     269|      10|      32|       7
---------------------------------------------------------------------------
   10-   32 (31.42/20.08)	ESQPPvsGETPLPmASSAHTTPS
  282-  301 (39.60/16.22)	DSQPP..GVTPVG.AAGGTSTPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.57|      15|      49|     357|     371|       8
---------------------------------------------------------------------------
  357-  371 (29.79/19.24)	YYYNAVTGESTYDKP
  409-  423 (32.78/21.86)	YYYNNRTKTSCWQIP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23683 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DSGTPVASSSIPAPSVQTGPESNGSKTVDSTAKGLQVDNNKDKAKDTNGDANVSDTSSDSEDEDNGPSKEECII
2) IPNEVAELKKKQDGDVTKDHLMSVSNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQNSPSALDLIKKKL
3) MASPAWLPQESQPPVSGETPLPMASSAHTTPSTAPAPAPPFAYGMLQNVNASGSSQQSSTHPGMKSNSAVNPMVVQPP
4) PQSGAIFSSNQQHAQSSTNMPDSVAQDVGKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSW
5) PVLPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSVPAMAAPPQGLWLQPPQMS
6) VALPAVPIPDSQPPGVTPVGAAGGTSTPSSSHQLRGTTALQTEVISGPADDKKKLNSVDTVNEDAANNDQLDA
497
422
1
93
164
273
570
495
78
156
248
345










Molecular Recognition Features






MoRF SequenceStartStop




1) LIKKKL
490
495