<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23679

Description ATP-dependent DNA helicase Q-like 4A isoform B
SequenceMRHGEANSGQGPKVNLLQHANALENFSSQAKFLSSTFLFSVPPKKPHHEQPNPGFVFRRSETIQGSQRVQVEKALAAHSSLQNSSRNYVQPGKTQVTPQLHEDRRTTSFHGGYENGNHRCPDVAATPIVNNHNSRGLDGSVNNHTNYTGQINKSSNCMAVDIDDDDSLFKNIDVDQIVEDYCTPKPSISKLPPITPTADKDNFARQGDDVLPPELCLDCVHGYMLGFCPEAASHLQDMKDNLIAIFNELLDNGENLNSTQIAKLRHDRSQLNKQIQQLEKYIHSGNLNEERQKSHFSASTAPPTSFVYETPQQTVLCNGSKRYDTEAYMGNGTYGSSFQSLPPFSVDNCSMPSGSVGREVFIPKIIEVNYIEGSGDKRWSSYDFSWTKELEVNNKKVFGNHSFRPNQREIINASMSGCDVFVLMPTGGGKSLTYQLPALIHPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQDILRELNSDYCKYKLLYVTPEKVARSDNLLRHLDNLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVNEDVVQALGLVNCIIFRQSFNRPNLRYSVIPKTKKCLEDIDKFIRENHFDECGIVYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPVQRASVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQHSSCVLYYTYSDYIRVKHMLSQGAIEQSSMTSGYNRSNMINSGRILETNTENLVRMVSYCENDVDCRRLLQLAHFGEKFNSSTCLKTCDNCLKITSFIEKDVTEIAKQLVELVKLTGQRFSSSHILEVYRGSLSQMVKKHRHESVSLHGAGKHLAKGEASRILHHLVVEDFLWEEVKKSDFYGSVSSILKVNEPKIHNLFAGQRIILRFPSLVKASKPGKSDATPAKGSLTSGKLNVMQIDPPSPQTEVDDILSAKLYNALRLLRKSLVTEAGDGVMPHHIFGNATLLLISKRVPRRKEELLDINGIGK
Length1027
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-0.432
Instability index45.18
Isoelectric point7.57
Molecular weight115152.34
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23679
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.96|      18|      22|     608|     628|       2
---------------------------------------------------------------------------
  608-  625 (34.43/20.13)	CLEDIDKFIRENHFDECG
  629-  646 (33.52/18.82)	CLSRMDCEKVAEKLQECG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.34|      21|      23|     718|     738|       3
---------------------------------------------------------------------------
  718-  738 (38.94/26.72)	QHSSCVLYYTYSDYIRVKHML
  744-  764 (36.40/24.48)	EQSSMTSGYNRSNMINSGRIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.24|      21|      23|     962|     982|       4
---------------------------------------------------------------------------
  962-  982 (35.02/22.67)	SPQTEV.DDILSAKLY.NALRLL
  985- 1007 (28.22/16.90)	SLVTEAgDGVMPHHIFgNATLLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.12|      16|     458|     334|     349|       5
---------------------------------------------------------------------------
  334-  349 (31.90/17.86)	YGSSFQSLPPF.SVDNC
  793-  809 (28.22/15.02)	FGEKFNSSTCLkTCDNC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     264.47|      97|     222|     196|     296|       6
---------------------------------------------------------------------------
  196-  263 (84.92/62.02)	.................................................................................................................................................................PTADKDNFARQGDDV..LPPELCLD...CVHGYMLGFCPEAASHLqdMKDNLIAIFneLLDNGENLNSTQIAK
  264-  296 (26.91/ 9.68)	LRHDRSQLNKQIQQLEKYIHSGNLNEERQKSHF.........................................................................................................................................................................................................
  425-  486 (85.76/50.99)	.................................sastapptsfvyetpqqtvlcngskrydteaymgngtygssfqslppfsvdncsmpsgsvgrevfipkiievnyiegsgdkrwssydfswtkelevnnkkvfgnhsfrpnqreiinasmsgcdvfvlmPTGGGKSLTYQLPAL..IHPGITL.....VISPLVSLIQDQIMHL..LQANIPAAY..LSANMEWTEQQDILR
  488-  545 (66.88/36.99)	LNSDYCKYKLLYVTPEKVARSDNLLRHLDNLHF...............................................................................................................................................reLLARIVIDeahCVSQWGHDFRPD.................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.19|      27|     501|     383|     412|      11
---------------------------------------------------------------------------
  383-  412 (45.77/41.19)	DFSWTkelEVNNKKVFGNHS..FRPNQREIIN
  888-  916 (44.41/31.24)	DFLWE...EVKKSDFYGSVSsiLKVNEPKIHN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23679 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RCPDVAATPIVNNHNSRGLDGSVNNHTNYT
2) SQRVQVEKALAAHSSLQNSSRNYVQPGKTQVTPQLHEDRRTTSFHGGYENGN
119
66
148
117










Molecular Recognition Features






MoRF SequenceStartStop




NANANA