<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23678

Description Pre-mRNA-processing protein 40C isoform A
SequenceMASPAWLPQEAQPPVSGETPLPMASSTPNSAPATPSTAPAPASPFAHGMLQNVNASGSSQLLSTHPAIISNSAVNPMVVQPPGVSSHAAPSFSYNIPQSGAIFSSNQQHAQSSTDVSKLSSASSIPHSVPAHTSTSLMPPPSDPNYCPATSWMPTALSFPVHPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAAFLRPNMPTPAIASDPTAPQKGLPYPSIPALAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGTPTPSASSYQLRGTTALQTEVISGSADDKKKLNSVDTLNEDAANNDQLDAWTAHKTEAGIIYYYNAVTGESTYHKPSGFKGESHQVSAQPTPVSMIDLPGTDWRLVSTSDGKKYYYNNLTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSTLQNSSSALDLIKKKLQDSGTPITPSSIHAPSVQIGPESNGSKTVDSTAKGVQVDNNKDKQKDTNGDADVSDTSSDSEDEDNGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKRLLDEASEDINYNTDFQTFRKKWGNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAASFKSMLKERGDMSFNSRWARVKESLRDDPRYKSVRHEDREVLFNEYISELKAAEHAAERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPLASWTESKPKLEKDPQRRATNPDLDPSDTEKLFREHVKMLQERCAHEFRVLLAEVLTSDAASQETNDGKTVLNSWSTAKRLLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASYDSREEKHTDAKGRTYLESSKHPLESGRSHERR
Length965
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.779
Instability index53.23
Isoelectric point8.41
Molecular weight106087.45
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23678
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     404.17|      66|      66|     629|     694|       1
---------------------------------------------------------------------------
  566-  625 (60.54/26.59)	....IIQFKEML......KE..RGV...APFSKWEKELP.......KivfD...PRFKA....I.PsysarRSLFEHY...VKTR.....AEE....ERKEK
  629-  694 (109.80/53.38)	QKAAIEGFKRLL......DEASEDINYNTDFQTFRKKWG.......N...D...PRFEA....L.D.....RKEQEHL...LNERVLPLKKAA....EEKAQ
  697-  756 (85.46/40.14)	RAAAAASFKSML......KERG.DMSFNSRWARVKESLR.......D...D...PRYKS....V.R.....HEDREVL...FNEYISEL.KAA....E....
  757-  797 (30.10/10.04)	.HAA.........................ERETKAKREE.......Q...DklrERERE....LrK.....RKEREEQ...EMERV.RLK............
  801-  860 (63.85/28.39)	.KEAVTSFQALL......VETIKD..PLASWTESKPKLE.......K...D...PQRRAtnpdL.D.....PSDTEKL...FREHVKMLQE...........
  862-  939 (54.40/23.25)	...CAHEFRVLLaevltsDAASQETN...DGKTVLNSWStakrllkS...D...PRYNK....V.P.....RKEREALwrrYAEDMLRRQKASydsrEEK..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     135.60|      27|      27|      97|     123|       3
---------------------------------------------------------------------------
    3-   29 (37.67/12.68)	SPAWLPQEAQPPVS...........GETP..LPMASstPN
   30-   66 (25.18/ 6.12)	SAPATPSTAPAPASpfahgmlqnvnASGSSQLLSTH..P.
   99-  127 (32.47/ 9.95)	SGAIFSSNQQHAQS...........STDVSKLSSASsiPH
  128-  155 (40.27/14.05)	SVPAHTSTSLMPPP...........S.DPNYCPATSwmPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     205.00|      46|     105|     157|     202|       4
---------------------------------------------------------------------------
  157-  197 (70.60/36.89)	.......................LSFPVHPVM..PTQG.NPG..PPGLASSAIISSNP....AA............PSTGTDSSP
  198-  261 (50.06/23.64)	AAFLRpnmptpaiasdptapqkgLPYPSIPALaaPPQGlWLQ..PPQM..SGVLRP.PylqyPA............PFPG....P
  262-  300 (46.13/21.11)	FPFPA................rgVALPAVPI...PDSQ.PPGvtPVGAAGG...TPTP....SA............SS.......
  440-  483 (38.21/16.00)	.......................MSVPNTNVL..SDR............GSGMVTLNA....PAintggrdaaalkPSTLQNSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.73|      26|      51|     343|     368|       6
---------------------------------------------------------------------------
  343-  368 (50.07/37.05)	WTAHKTEAGIIYYYNAVTGESTYHKP
  395-  420 (51.66/38.47)	WRLVSTSDGKKYYYNNLTKTSCWQIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.04|      12|      16|     531|     542|       9
---------------------------------------------------------------------------
  531-  542 (21.34/12.42)	DNNKDKQKDTNG
  548-  559 (20.70/11.83)	DTSSDSEDEDNG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23678 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEHAAERETKAKREEQDKLRERERELRKRKEREEQEMERVR
2) ALQTEVISGSADDKKKLNSVDTLNEDAANNDQLDA
3) EVAELKKKQDGDVTKDHLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSTLQN
4) MASPAWLPQEAQPPVSGETPLPMASSTPNSAPATPSTAPAPASPFAHGMLQNVNASGSSQLL
5) PQSGAIFSSNQQHAQSSTDVSKLSSASSIPHSVPAHTSTSLMPPPSDPNYC
6) QKASYDSREEKHTDAKGRTYLESSKHPLESGRSHERR
7) SALDLIKKKLQDSGTPITPSSIHAPSVQIGPESNGSKTVDSTAKGVQVDNNKDKQKDTNGDADVSDTSSDSEDEDNGPSKEECII
8) SFPVHPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAAFLRPNMPTPAIASDPTAPQKGLPYPSI
9) VALPAVPIPDSQPPGVTPVGAAGGTPTPSASSYQLRGT
10) WTESKPKLEKDPQRRATNPDLDPSDTEKLF
755
308
422
1
97
929
483
158
269
822
795
342
480
62
147
965
567
226
306
851










Molecular Recognition Features






MoRF SequenceStartStop




1) LIKKKL
487
492