<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23673

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMLQHQIVLSPARLGLANPNSPSIPNPTPPKLPPTHTQDRNSSTPSSALLSLLPPLPRAQALLVQLASLASKLFEVSPNRSLWVTAFRGSLPTFLSSHSSTPLCASSNAKEIISLFTVLQTQIFEAVAELQEILDLQDAKQKIDCEIHSQDSTLLSFANKLKDAESCLDILVDDYSDYRRSKRLKFGDDDSMTSSTVSSQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKEVETKEKIVEAIVEPPPQVDTNAVPNLSAFQGMLPPMPPGWKPGMPVQLPIDLPLPPPGWKPGDPVPLPPMDSLQIPRFAEQQIQPHIPQPKQPEVIQVQPVNLDLGGSDTSDYSSDDASSDDED
Length384
PositionMiddle
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.05
Grand average of hydropathy-0.329
Instability index61.11
Isoelectric point4.69
Molecular weight41807.88
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364141

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23673
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.14|      13|      18|     297|     314|       1
---------------------------------------------------------------------------
  297-  309 (32.95/19.68)	PPGWKPGMPVQLP
  316-  328 (33.19/10.35)	PPGWKPGDPVPLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.81|      22|      22|       8|      29|       2
---------------------------------------------------------------------------
    8-   29 (41.41/18.25)	LSPARLGLANPNSPS..IPNPTPP
   31-   54 (35.40/14.56)	LPPTHTQDRNSSTPSsaLLSLLPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.38|      11|      18|     104|     114|       6
---------------------------------------------------------------------------
  104-  114 (16.74/11.91)	ASSNAKEIISL
  125-  135 (16.64/11.79)	AVAELQEILDL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23673 with Med4 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KEKIVEAIVEPPPQVDTNAVPNLSAFQGMLPPMPPGWKPGMPVQLPIDLPLPPPGWKPGDPVPLPPMDSLQIPRFAEQQIQPHIPQPKQPEVIQVQPVNLDLGGSDTSDYSSDDASSDDED
2) NPNSPSIPNPTPPKLPPTHTQDRNSSTPSSAL
264
17
384
48










Molecular Recognition Features






MoRF SequenceStartStop




NANANA