<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23670

Description U-box domain-containing protein 52
SequenceMLEDKSMREFLLRIKAISDSLAFVRSPISLQEHIDAILEGLPQDYHSVISIIESKFQPLPIEKVEALLLPHEAQLLKFQKHIFDSPLINLTQVNPNSSSSFGFDAYVVSNKSSKQYDSDTFCGSFGRNGSFNRGDCRGGGGGDCGRGGGHFANFQCQEANEILLQGSLGSDRLYVFPNIQLQDSIAASSASCFVSDSVNNFNSDVKTTSSTSACTSTSSQTLWHLRLGHPSSNVSRLVLNHLNFPQSSDLSHSATSHSVASENVPTKLDYFLGIEVKSMDDGSILLTQSKYITDLLQKTKMAKVQPISSPMVSRCELTKTGTNILSDPTLYRSMVGALQYSTITRPERSFVVNKAKEINQWKEERIAEEATKLPKEAALELAEKEKVKAQAALEAYEEAIKMVEKEAQRRIQAEVKARREAQEKDRALNLLIINDTRYRKYSIKDIEEATQKFSPSLKVGEGGYGPVFRGQLDHTPVAIKILNPDASHGRRQFQQEVEILCSIRHPNMVLLLGACPEYGCLVYEYLENGSLEDRLLMKNDSPPIPWWKRFEIAAEIATALLFLHQTKPEPIVHRDLKPANILLDKNFVSKISDVGLARLVPPSVADSVTQYHLTAAAGTFCYIDPEYQQTGKLTKKSDIYSLGIMLLQIITAKPPMGLAHHVRMAIEKETFSEMLDIMISDVPLEEALAFVKLSLSCTELSKKDRPDLATVVVPELNRLRDFGLAFQNRSHPPHLPTPTRSPRSRISKIMHKWEFVNEHFKRGQKELLSEIKRLKTVPQSSTHPPDAGKPGADENSLSNPGGDDTGSTSTSSSSFKYQGSVETNTTPSHQLSSENKKLKKDNETLSCELARARGEWQKMENPNLRMAMGIKPDQKGVRIRRIDPTAPESKVLKSSDVIHSFDGLILPMMEQNMHIPSLLLQAQPTLAQMGHGKNQGFTQKSWFPWIKKVGFMVLALCACMAISKEKIEDPLSGSLCISECATYPTICSTPPPSLTTTFSNHPPPSSPLSLETCIPPPPQHLITPLSSSIPPLPPLLVSYPSPPSTILTSNPPPPPLLTSYDPPPYPLLTYPPPSLAQGLHKLLY
Length1084
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-0.349
Instability index52.73
Isoelectric point7.35
Molecular weight120074.01
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23670
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.87|      18|      18|    1026|    1043|       1
---------------------------------------------------------------------------
  999- 1018 (30.72/10.68)	S...NHPPPSSPLSLETciPPPP
 1026- 1043 (38.18/14.95)	S...SSIPPLPPLLVSY..PSPP
 1044- 1064 (34.98/13.11)	StilTSNPPPPPLLTSY..DPPP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.27|      17|      20|     824|     842|       2
---------------------------------------------------------------------------
  826-  842 (29.14/21.26)	TPSHQLS...SENKKLKKDN
  844-  863 (27.12/11.98)	TLSCELArarGEWQKMENPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.28|      17|      22|     136|     157|       3
---------------------------------------------------------------------------
  122-  133 ( 4.96/ 7.43)	...CGSFGrnGS.FNR....
  141-  157 (36.28/18.56)	GGDCGRGG..GH.FANFQCQ
  165-  182 (26.04/ 9.65)	QGSLGSDR..LYvFPNIQLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.39|      24|      28|     368|     395|       4
---------------------------------------------------------------------------
  369-  397 (25.08/27.74)	EATKL.PKEAALELaeKEKVKAQAalEA..yE
  398-  425 (29.31/17.84)	EAIKMvEKEAQRRI..QAEVKARR..EAqekD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.35|      15|      28|      27|      44|       5
---------------------------------------------------------------------------
   27-   44 (17.62/17.19)	PISLqEHIDAILegLPQD
   58-   72 (26.72/13.01)	PLPI.EKVEALL..LPHE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.28|      24|     221|      75|      98|       7
---------------------------------------------------------------------------
   75-   98 (41.46/27.83)	LLKFQKHIFD.SPLINLTQVNPNSS
  285-  309 (33.82/21.25)	LLTQSKYITDlLQKTKMAKVQPISS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.29|      15|      22|     535|     549|       9
---------------------------------------------------------------------------
  535-  549 (30.93/16.31)	LLMKNDSPPIPWWKR
  560-  574 (27.36/13.61)	LLFLHQTKPEPIVHR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.82|      11|      79|     983|     994|      10
---------------------------------------------------------------------------
  983-  994 (19.53/12.27)	YPTIcSTPPPSL
 1065- 1075 (24.29/10.25)	YPLL.TYPPPSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.14|      12|      15|     786|     797|      11
---------------------------------------------------------------------------
  786-  797 (20.47/11.82)	DAGKPGADENSL
  804-  815 (19.67/11.04)	DTGSTSTSSSSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.26|      26|      27|     646|     672|      12
---------------------------------------------------------------------------
  646-  672 (39.55/34.42)	LLQIITAKPPM..GLAhHVRMAIEKETFS
  674-  701 (37.71/26.40)	MLDIMISDVPLeeALA.FVKLSLSCTELS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     157.57|      52|     301|     588|     645|      13
---------------------------------------------------------------------------
  588-  645 (79.95/65.48)	VSKISDV..GLARLVPPSVADSVtqyHLTAaagTFCYIDPEYQQTGK.....LTKKS...DIYSLGIM
  891-  952 (77.62/48.21)	VLKSSDVihSFDGLILPMMEQNM...HIPS...LLLQAQPTLAQMGHgknqgFTQKSwfpWIKKVGFM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23670 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLSEIKRLKTVPQSSTHPPDAGKPGADENSLSNPGGDDTGSTSTSSSSFKYQGSVETNTTPSHQLSSENKKLKKDNETLSCELARARGEWQKMENPNLRMAMGIKPDQKGVRIRRIDPTA
767
886










Molecular Recognition Features






MoRF SequenceStartStop




1) IMHKW
749
753