<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23669

Description Pre-mRNA-processing protein 40A isoform F
SequenceMSPIERADASTVWKEFTSSEGRKYYYNKVTQQSTWSIPEELKLAREQAQNAANQGMQSETSDTCNAVVSSTETPTPTAANAASLNTSLTSNGLASSPSSVTPIAATDSQRLVSGLSGTSVSHSMATPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQPKMPPVVENQASQDFASANGSSLQDIEEAKRPLPVVGKNNVTPPEEKTNDDETLVYANKLEAKNAFKALLESVSVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRQNIAEYRKFLESCDYVKVNSPWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQKRIQKDRIRRGERKNRDAFRKLLGEHVSAGILTAKTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVAEDLEKQYHEDKTLIKDTVKSGKITVVTTSVFEEFKVAVLEGAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITTSSKWEDCKSLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKDRKREEEKAKKEKEREEKRKEKEKKEKDREREKDKSKERNKKDETDSDNQDMADSHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKHANSPESDNENRHRRHKRDHWDGSRKTGGHEELEDGELGDDAEN
Length776
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.251
Instability index51.08
Isoelectric point5.82
Molecular weight89862.44
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23669
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.35|      24|      25|     618|     641|       1
---------------------------------------------------------------------------
  619-  646 (35.80/15.04)	EKAKEKDRKREEEKAKKEKEREE.krkeK
  647-  674 (28.97/10.64)	EK.KEKDREREKDKSKERNKKDEtdsdnQ
  675-  695 (31.58/12.32)	DMADSHGYK.EEKK..KEKDKER.....K
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     127.87|      26|      28|      59|      84|       2
---------------------------------------------------------------------------
   49-   78 (39.20/28.01)	Q.NAANQgmqsETSDTCNAVVSSTETPTPTA
   79-  104 (39.24/28.05)	A.NAASL....NTSLTSNGLASSPSSVTPIA
  105-  131 (26.80/16.68)	AtDSQRL..vsGLSGT..SVSHSMATPSTTG
  132-  148 (22.63/12.87)	V.EPST.............VVTTSAAPTIVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     456.15|      64|      65|     237|     300|       3
---------------------------------------------------------------------------
  183-  233 (42.05/20.16)	........LQDIEEAKR..PL..PVVGknnvtppEE.KTNDDETLVYANKLE.................AK............NAF.KALLE..SV
  237-  300 (101.23/60.49)	SDWTWEQAMREIINDKRYNAL..KTLG.......ER.KQAFNEYLGQRKKLEAEERRMKQKR.......AR............EEF.TKMLE..EC
  305-  368 (91.42/53.80)	SSMRWSKAISMFENDERFNAV..ERPR.......DR.EDLFESYMVELERKEKENAAEEHRQ.......NI............AEY.RKFLE..SC
  373-  442 (84.69/49.22)	VNSPWRKIQDRLEDDDRYLRL..EKI........DR.LLVFQDYIRDLEKEEEEQKRIQKDRirrgerkNR............DAF.RKLLG..EH
  450-  531 (58.63/31.46)	AKTQWREYCLKVRDLPQYQAVasNTSG.......STpKDLFEDVAEDLEKQYHEDKTLIKDT.......VKsgkitvvttsvfEEFkVAVLEgaAC
  535-  575 (49.18/25.02)	SEINLKL................................IFEELL.ERAK.EKEEKEAK.KR.......QR..........laDDF.TNLLY..TF
  582-  614 (28.94/11.23)	SKWEDCKSLFE..ETQEYRSI..GDES.......YS.REIFEEYI...................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.19|      23|      28|     708|     732|       4
---------------------------------------------------------------------------
  718-  742 (33.63/18.18)	KKSRRHGSER.KKSRKhaNSPESDNE
  743-  766 (36.56/14.71)	NRHRRHKRDHwDGSRK..TGGHEELE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23669 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KDRKREEEKAKKEKEREEKRKEKEKKEKDREREKDKSKERNKKDETDSDNQDMADSHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKHANSPESDNENRHRRHKRDHWDGSRKTGGHEELEDGELGDDAEN
2) SIPEELKLAREQAQNAANQGMQSETSDTCNAVVSSTETPTPTAANAASLNTSLTSNGLASSPSSVTPIAATDSQRLVSGLSGTSVSHSMATPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQPKMPPVVENQASQDFASANGSSLQDIEEAKRPLPVVGKNNVTPPEEKTNDDETLVY
624
36
776
216










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYNKV
2) RHRRHKRDHWDGSRKTGGHEELEDGEL
3) SIDDVD
21
744
703
29
770
708