<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23668

Description Pre-mRNA-processing protein 40A isoform G
SequenceMQSETSDTCNAVVSSTETPTPTAANAASLNTSLTSNGLASSPSSVTPIAATDSQRLVSGLSGTSVSHSMATPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQPKMPPVVENQASQDFASANGSSLQDIEEAKRPLPVVGKNNVTPPEEKTNDDETLVYANKLEAKNAFKALLESVSVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRQNIAEYRKFLESCDYVKVNSPWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQKRIQKDRIRRGERKNRDAFRKLLGEHVSAGILTAKTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVAEDLEKQYHEDKTLIKDTVKSGKITVVTTSVFEEFKVAVLEGAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITTSSKWEDCKSLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKDRKREEEKAKKEKEREEKRKEKEKKEKDREREKDKSKERNKKDETDSDNQDMADSHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKHANSPESDNENRHRRHKRDHWDGSRKTGGHEELEDGELGDDAEN
Length721
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.265
Instability index50.39
Isoelectric point5.80
Molecular weight83555.59
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23668
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.35|      24|      25|     563|     586|       1
---------------------------------------------------------------------------
  564-  591 (35.80/13.68)	EKAKEKDRKREEEKAKKEKEREE.krkeK
  592-  619 (28.97/ 9.61)	EK.KEKDREREKDKSKERNKKDEtdsdnQ
  620-  640 (31.58/11.17)	DMADSHGYK.EEKK..KEKDKER.....K
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.73|      26|      28|       4|      29|       2
---------------------------------------------------------------------------
    4-   24 (32.17/23.11)	..........ETSDTCNAVVSSTETPTPTAA
   25-   50 (39.33/29.99)	NAASL.....NTSLTSNGLASSPSSVTPIAA
   52-   77 (27.23/18.36)	DSQRLvsglsGTS.....VSHSMATPSTTGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     459.01|      64|      65|     182|     245|       3
---------------------------------------------------------------------------
  128-  178 (42.10/19.82)	........LQDIEEAKR..PL..PVVGknnvtppEE.KTNDDETLVYANKLE.................AK............NAF.KALLE..SV
  182-  245 (101.51/59.29)	SDWTWEQAMREIINDKRYNAL..KTLG.......ER.KQAFNEYLGQRKKLEAEERRMKQKR.......AR............EEF.TKMLE..EC
  250-  313 (91.45/52.61)	SSMRWSKAISMFENDERFNAV..ERPR.......DR.EDLFESYMVELERKEKENAAEEHRQ.......NI............AEY.RKFLE..SC
  318-  387 (85.31/48.52)	VNSPWRKIQDRLEDDDRYLRL..EKI........DR.LLVFQDYIRDLEKEEEEQKRIQKDRirrgerkNR............DAF.RKLLG..EH
  395-  476 (58.93/31.00)	AKTQWREYCLKVRDLPQYQAVasNTSG.......STpKDLFEDVAEDLEKQYHEDKTLIKDT.......VKsgkitvvttsvfEEFkVAVLEgaAC
  480-  520 (50.75/25.57)	SEINL................................KLIFEELL.ERAK.EKEEKEAK.KR.......QR..........laDDF.TNLLY..TF
  527-  559 (28.96/11.10)	SKWEDCKSLFE..ETQEYRSI..GDES.......YS.REIFEEYI...................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.19|      23|      28|     653|     677|       4
---------------------------------------------------------------------------
  663-  687 (33.63/16.52)	KKSRRHGSER.KKSRKhaNSPESDNE
  688-  711 (36.56/13.35)	NRHRRHKRDHwDGSRK..TGGHEELE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.60|      18|      28|      79|      96|       5
---------------------------------------------------------------------------
   79-   96 (30.04/21.76)	P..STVVTTSAAPTI..VAGSS
  106-  127 (23.57/15.58)	PkmPPVVENQASQDFasANGSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23668 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KDRKREEEKAKKEKEREEKRKEKEKKEKDREREKDKSKERNKKDETDSDNQDMADSHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKHANSPESDNENRHRRHKRDHWDGSRKTGGHEELEDGELGDDAEN
2) MQSETSDTCNAVVSSTETPTPTAANAASLNTSLTSNGLASSPSSVTPIAATDSQRLVSGLSGTSVSHSMATPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQPKMPPVVENQASQDFASANGSSLQDIEEAKRPLPVVGKNNVTPPEEKTNDDETLVY
569
1
721
161










Molecular Recognition Features






MoRF SequenceStartStop




1) RHRRHKRDHWDGSRKTGGHEELEDGEL
2) SIDDVD
689
648
715
653