<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23667

Description Pre-mRNA-processing protein 40A isoform A
SequenceMANNSQPSSMQFRPVTQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTQRPMQPGHPAPSSQAIPMQYIQTNRPLTSIPPHSQQNVPPLSNHMPGLAVSVAAPHSSYFTLSYGQQQDNANALAQYQHPPQMFAPPSGQPWPSSASQSAVAVTSVQPAGVQSSGATSTDAVINATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSEGRKYYYNKVTQQSTWSIPEELKLAREQAQNAANQGMQSETSDTCNAVVSSTETPTPTAANAASLNTSLTSNGLASSPSSVTPIAATDSQRLVSGLSGTSVSHSMATPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQPKMPPVVENQASQDFASANGSSLQDIEEAKRPLPVVGKNNVTPPEEKTNDDETLVYANKLEAKNAFKALLESVSVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRQNIAEYRKFLESCDYVKVNSPWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQKRIQKDRIRRGERKNRDAFRKLLGEHVSAGILTAKTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVAEDLEKQYHEDKTLIKDTVKSGKITVVTTSVFEEFKVAVLEGAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITTSSKWEDCKSLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKDRKREEEKAKKEKEREEKRKEKEKKEKDREREKDKSKERNKKDETDSDNQDMADSHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKHANSPESDNENRHRRHKRDHWDGSRKTGGHEELEDGELGDDAEN
Length1002
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.135
Instability index54.26
Isoelectric point6.12
Molecular weight114375.26
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23667
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     145.46|      36|      38|     198|     235|       1
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  198-  226 (52.68/27.76)	..............WQEHTSADGRRYYYNKRTRQSSWEKPLEL
  229-  267 (63.04/37.87)	PIERADA....stvWKEFTSSEGRKYYYNKVTQQSTWSIPEEL
  268-  300 (29.73/ 9.67)	KLAREQAqnaanqgMQSETSDTCNAVV.......SSTETP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     130.08|      24|      25|     844|     867|       2
---------------------------------------------------------------------------
  844-  867 (42.01/21.29)	KEKAKEK......DRKREE.EKAKKEK....EREE
  872-  894 (36.59/17.56)	KEK.KEK......DREREK.DKSKERN....KKDE
  900-  920 (31.66/14.16)	QDMADSH......GYK.EE.KK..KEK....DKER
  921-  955 (19.82/ 6.01)	KHRKRHQssiddvDSEKEEkEESKKSRrhgsERKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     130.19|      28|      29|     301|     328|       3
---------------------------------------------------------------------------
  301-  328 (46.51/29.84)	TPTAANAASLNTS.......LTSNGLA.SSPSS..................VTP
  330-  353 (30.60/17.00)	..AATDSQRLVSG.......LS..GTS.VSHSM..................ATP
  354-  389 (29.06/15.76)	STTGVEPSTVVTTsaaptivAGSSGLAeNSPQQ..................PKM
  390-  429 (24.02/11.69)	PPVVENQASQDFA........SANG......SSlqdieeakrplpvvgknnVTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     233.16|      43|      54|      83|     125|       4
---------------------------------------------------------------------------
   13-   47 (44.49/20.48)	......RPVT....QAQQGQPfvPMNSQQFGPA.GHAIP...SSNAgMP
   55-   81 (52.17/25.18)	QYSQPMQQLTQ.........R..PM...QPGH....PAP...SSQA.IP
   83-  125 (80.05/42.24)	QYIQTNRPLTSIPPHSQQNVP..PLSNHMPGLAVSVAAP...HSSY.FT
  140-  181 (56.44/27.80)	QY..QHPPQMFAPPSGQ...P.wPSSASQSAVAVTSVQPagvQSSG.AT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     456.01|      64|      65|     463|     526|       5
---------------------------------------------------------------------------
  409-  459 (42.10/16.25)	........LQDIEEAKR..PL..PVVGknnvtppEE.KTNDDETLVYANKLE..................AK............NAF.KALLE..SV
  463-  526 (100.47/47.36)	SDWTWEQAMREIINDKRYNAL..KTLG.......ER.KQAFNEYLGQRKKLEAEERRMKQK.R.......AR............EEF.TKMLE..EC
  531-  594 (92.24/42.97)	SSMRWSKAISMFENDERFNAV..ERPR.......DR.EDLFESYMVELERKEKENAAEEHR.Q.......NI............AEY.RKFLE..SC
  599-  668 (83.90/38.53)	VNSPWRKIQDRLEDDDRYLRL..EKI........DR.LLVFQDYIRDLEKEEEEQKRIQKD.RirrgerkNR............DAF.RKLLG..EH
  676-  757 (59.29/25.41)	AKTQWREYCLKVRDLPQYQAVasNTSG.......STpKDLFEDVAEDLEKQYHEDKTLIKD.T.......VKsgkitvvttsvfEEFkVAVLEgaAC
  761-  801 (49.06/19.96)	SEINLKL................................IFEELL.ERAK.EKEEKEAKKRqR.......LA............DDF.TNLLY..TF
  808-  840 (28.94/ 9.24)	SKWEDCKSLFE..ETQEYRSI..GDES.......YS.REIFEEYI....................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.34|      13|      24|     956|     968|       7
---------------------------------------------------------------------------
  956-  968 (23.82/14.40)	SRKHANSPE.SDNE
  982-  995 (19.52/10.31)	SRKTGGHEElEDGE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23667 with Med35 domain of Kingdom Viridiplantae
Unable to open file!