<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23666

Description Pre-mRNA-processing protein 40A isoform D
SequenceMTFHLQFRPVTQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTQRPMQPGHPAPSSQAIPMQYIQTNRPLTSIPPHSQQNVPPLSNHMPGLAVSVAAPHSSYFTLSYGQQQDNANALAQYQHPPQMFAPPSGQPWPSSASQSAVAVTSVQPAGVQSSGATSTDAVINATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSEGRKYYYNKVTQQSTWSIPEELKLAREQAQNAANQGMQSETSDTCNAVVSSTETPTPTAANAASLNTSLTSNGLASSPSSVTPIAATDSQRLVSGLSGTSVSHSMATPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQPKMPPVVENQASQDFASANGSSLQDIEEAKRPLPVVGKNNVTPPEEKTNDDETLVYANKLEAKNAFKALLESVSVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRQNIAEYRKFLESCDYVKVNSPWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQKRIQKDRIRRGERKNRDAFRKLLGEHVSAGILTAKTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVAEDLEKQYHEDKTLIKDTVKSGKITVVTTSVFEEFKVAVLEGAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITTSSKWEDCKSLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKDRKREEEKAKKEKEREEKRKEKEKKEKDREREKDKSKERNKKDETDSDNQDMADSHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKHANSPESDNENRHRRHKRDHWDGSRKTGGHEELEDGELGDDAEN
Length997
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-1.127
Instability index54.08
Isoelectric point6.15
Molecular weight113956.88
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23666
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     145.46|      36|      38|     193|     230|       1
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  193-  221 (52.68/39.02)	..............WQEHTSADGRRYYYNKRTRQSSWEKPLEL
  224-  262 (63.04/53.09)	PIERADA....stvWKEFTSSEGRKYYYNKVTQQSTWSIPEEL
  263-  295 (29.73/13.83)	KLAREQAqnaanqgMQSETSDTCNAVV.......SSTETP...
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.26|      24|      25|     839|     862|       2
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  839-  862 (42.01/19.75)	KEKAKEKDRKREEEKAKKEKEREE
  867-  889 (36.59/16.27)	KEK.KEKDREREKDKSKERNKKDE
  895-  915 (31.66/13.11)	QDMADSHGYK.EEKK..KEKDKER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     130.19|      28|      29|     296|     323|       3
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  296-  323 (46.51/33.52)	TPTAANAASLNTS.......LTSNGLA.SSPSS..................VTP
  325-  348 (30.60/19.15)	..AATDSQRLVSG.......LS..GTS.VSHSM..................ATP
  349-  384 (29.06/17.76)	STTGVEPSTVVTTsaaptivAGSSGLAeNSPQQ..................PKM
  385-  424 (24.02/13.21)	PPVVENQASQDFA........SANG......SSlqdieeakrplpvvgknnVTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     456.08|      64|      66|     458|     521|       4
---------------------------------------------------------------------------
  404-  454 (42.04/17.34)	........LQDIEEAKR..PL..PVVGknnvtppEE.KTNDDETLVYANKLE..................AK............NAF.KALLE..SV
  458-  521 (100.22/50.72)	SDWTWEQAMREIINDKRYNAL..KTLG.......ER.KQAFNEYLGQRKKLEAEERRMKQK.R.......AR............EEF.TKMLE..EC
  526-  589 (91.91/45.95)	SSMRWSKAISMFENDERFNAV..ERPR.......DR.EDLFESYMVELERKEKENAAEEHR.Q.......NI............AEY.RKFLE..SC
  594-  663 (84.47/41.68)	VNSPWRKIQDRLEDDDRYLRL..EKI........DR.LLVFQDYIRDLEKEEEEQKRIQKD.RirrgerkNR............DAF.RKLLG..EH
  671-  752 (58.79/26.95)	AKTQWREYCLKVRDLPQYQAVasNTSG.......STpKDLFEDVAEDLEKQYHEDKTLIKD.T.......VKsgkitvvttsvfEEFkVAVLEgaAC
  756-  796 (49.70/21.73)	SEINLKL................................IFEELL.ERAK.EKEEKEAKKRqR.......LA............DDF.TNLLY..TF
  803-  835 (28.94/ 9.82)	SKWEDCKSLFE..ETQEYRSI..GDES.......YS.REIFEEYI....................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.92|      19|      21|      42|      62|       5
---------------------------------------------------------------------------
    9-   22 (20.92/ 7.47)	...................PVTQAQQGQPFVPM
   25-   55 (30.03/14.64)	QQF..GPaghaipssnagmPVIQGQQLQYSQPM
   56-   83 (21.96/14.91)	QQLtqRP.....mqpghpaPSSQAIPMQYIQTN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.74|      18|      20|     937|     954|       6
---------------------------------------------------------------------------
  916-  938 (19.70/ 7.57)	KHRKRHQSsiDDVDSEKE.ekeES
  939-  960 (26.36/12.54)	KKSRRHGS..ERKKSRKHanspES
  961-  977 (21.67/ 9.03)	DNENRH.....RRHKRDH..wdGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      88.25|      15|      20|     146|     160|       7
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   99-  113 (22.14/12.95)	PLSNHMPGLAVS...VAA
  114-  131 (18.49/ 9.42)	PHSSYFTLSYGQqqdNAN
  146-  160 (26.50/17.15)	PSGQPWPSSASQ...SAV
  167-  181 (21.12/11.96)	PAGVQSSGATST...DAV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23666 with Med35 domain of Kingdom Viridiplantae
Unable to open file!