<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23660

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMECVAKMTKVAQQKGSDPLLWAFQMYSNLNSAGESLPSLELAEFLVSYICWDNNVPILWKFLEKALTLQIVPPMLLLALLSVRVIPCRHVQPAAYRLYLELVKRHAFELKSQINRPDYQKVMKSIDAVLHLSNIFGMSQSEPGILVVEFIFSIVWQLLDASLDDEGLLEFTPDKKSRWATLYHDMELDRHDNYSEQRTEHHEKLQNANTLMAVEMIGQFLQDKISSRLLYLARQNLPAHWLSFTQRLQLLGENSLALRKSRTLSPEELLELTSDSCMVLSRECKTNSQKKFQTVMSFEYLSSSASLCHGASHSALWIPLDLVLEDSMDGYQVSATSSIETISGLIKTLRAINGTSWHDTFLGLWLATLRLVQRERDPIDGPMPHLDTRLCMLLCIIPLVVGDLIEEEEERTPVDEKDSGLTDCWKEKKVAGKCHNDLVSSLQVLGDYQSLLTPPQSVLAASNQAAAKAMLFVSGITIGSAYFDCLNMTEMPVDCSGNMRHLIVEACIARNLLDTSAYLWPGYVNGCINQIPQCMPAQVPGWSSFMKGAPLTSVMVNALVSSPATSLAELEKIFEIAIGGSEDEKISAAAILCGASLIRGWNIQEHTVHFILRLLSPPVPAENTEGNNYLINYAPILNVLFVGIASVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNISWTLTSGEEISAHAVFSNAFILLLKLWRFNRPPLEYGIGDVPTVGSQLTPEYLLLVRNSHLMSAGNIHKDRNRRRLSEIASLSSPNSVFVDSFPKLKVWYRQHQACIASTLSGLVHGTPFHQIVEGLLNMMFTKINRGSQTTITSGSSSSSGPANEDTSIGPKLPAWDILEAIPFVVDAALTACAHGRLSPRELATGLKDLADFLPASLATIISYFSAEVTRGVWKPVFMNGTDWPSPGANLLNVEGQIRKILAATGVDVPSLASGDSCPAILPLPLAAFTSLTITYKVDKTSERFLNLAGQTLESLAAGCPWPCMPIVASLWTLKAKRWSDFLIFSASRTVFLHNSDAVVQLIKSCFTATLGMNSSPISSSGGVGALLGQGFKYHLCGGLCPVAPGILYLRAYRSIRDIVFLTEEIVSILMHSVREIVCSGLPRERLEKLKATKDGIKYGQASLAASMTRVKLAAALGASLVWISGGLMLVQLLIKETLPSWFISVHRLDQEEKSGGMVAMLGGYALAYFAVLCGAFAWGVDSSSAASKRRPKVLGTHMEFLASALDGKISLGCDSATWRAYVSGFVSLMVGCTPNWVLEVDVHVLKRLSNGLRQLNEEELALALLGVGGVGTMGAAAELIIDTEI
Length1316
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.08
Grand average of hydropathy0.188
Instability index44.66
Isoelectric point5.96
Molecular weight143989.25
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23660
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     399.12|     125|     135|     936|    1070|       1
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  936- 1034 (130.93/90.95)	...........................................GVDVPSLASGDSCPAILPLP...LAAFTSLTITYKVDKTSERFLNLAG...QTLESLAA...GC.P.WPCMPIVASLWTLK.AKRwsdfliFSASrTVFLHNSDAVVQ.LIK
 1035- 1166 (161.05/104.30)	SCFTATLGMNSSpiSSSGGVGALLGqGF..KYH..LCGGLcpvAPGILYLRAYRSIRDIVFLT...EEIVSILM.......HSVREIVCSGlprERLEKLKAtkdGI.K.YGQASLAASMTRVKlAAA......LGAS.LVWISGGLMLVQlLIK
 1171- 1267 (107.15/58.51)	SWFISVHRLDQE..EKSGGMVAMLG.GYalAYFavLCGAF.awGVDSSSAASKRR.PKVLGTHmefLASALDGKISLGCDSATWR.AYVSG.....FVSLMV...GCtPnW............................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     215.01|      72|     135|     612|     690|       2
---------------------------------------------------------------------------
  450-  495 (55.86/27.35)	LLTPPqsvLAASNQAAAKAML....FVSGITIGSAYFDCLNMTEM.......P...VDCS..........................
  613-  690 (117.94/91.97)	LLSPP...VPAENTEGNNYLInyapILNVLFVGIASVDCVQIFSLHGLV...P..QLACSLMPIceVFGSCVPNISWTLTSGEEIS
  785-  829 (41.21/19.40)	......................................CIA.STLSGLVhgtPfhQIVEGLLNM..MFTKINRGSQTTITSGSSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     178.76|      51|     135|     178|     232|       3
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  178-  232 (79.01/63.39)	WATLYHDMEL..DRHDNYSEQRTEHHEKLQN.ANTLMAVEmiGQFLQDKISSrlLYLA
  240-  268 (23.03/ 8.22)	WLSFTQRLQLlgENSLALRKSRTLSPEEL.............................
  316-  366 (76.72/49.18)	WIPL..DLVL.eDSMDGYQVSATSSIETISGlIKTLRAIN..GTSWHDTFLG..LWLA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23660 with Med33 domain of Kingdom Viridiplantae
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