<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23659

Description Mediator of RNA polymerase II transcription subunit 16 (Fragment)
SequenceLSLSCLILPKPQLRRVVCSTVRETHVSAYDSCTVNLLILFPGAVSWCGKLNAIACPSETCARIPSSTGNPPFWIPIHIVIPERPTECAVFNVIADTDISVLSTPVGGFTMKDSPRDSVQFIEWSPTCCPHASLIANFHGRVTIWTQPSQICFSCLFVSDFLSIPGQANLALDASCWLREHEWQQDIAVVTKWLSGYRWLSSKPSAPANSRSTFEEKFLSRQCQTSGSVQLHWSQWPPQNATTPKWFCTSKGPLGCGPCGIMAGDAIITDSGTMLVTGVPIVNPSTIVVWEVMPGPAQSAATTTWGSGVTAVAFDPTCGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQHDVLHPIFGNPTSSMGGQPPMQTVWQTKVELSIPPTNDFKNHQAPAVGMNTDMQKVSDFGFDKSKRFDFYPFDLPKVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTSKDQTILKIIRVLPHAIPTSQVKANSSNWERAIAERKSRFWWSLLVGVNWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSAQHRQHYCPILSQLVPASKGGEEPSPGRSRIGTGNAGQGYTYGERLTVNLWSYYTGNAGLQHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLCELELHPPAEEWHRRNMFGGPWSDPDVLDSANDALKLVSLNPLDSSSLENCDVYYGANGLWPRKRRMSERDAAFGLNTYVGLGAYLGIMGSRRDAVTALWKTGLEGIWYKCMRCLQQTCAFASPASTNLPSQNDREIWWISSWAYGCPMCGGTWVRVWHPPNFVTCAKRFAPSMDHIRRQGENACGGDYFLVGPKRLKLTEHDKLLNKFLGTGELWCLCWEGIILGNVFAVMEELVSRRKLLKKYVSNLDLEKLVLL
Length931
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.10
Grand average of hydropathy-0.117
Instability index47.73
Isoelectric point6.56
Molecular weight102429.70
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23659
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.48|      32|      37|     820|     856|       1
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  222-  252 (40.35/19.29)	.CQTSG...SVqlhWSQ.....................W...P.PQNATTPKWFCTSKGP.
  254-  311 (31.49/ 9.94)	GCGPCGimaGD...AIItdsgtmlvtgvpivnpstivVWEvmPgPAQSAATTTWGSGVTAV
  820-  851 (66.64/46.69)	GCPMCG...GT...WVR....................VWH..P.PNFVTCAKRFAPSMDHI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.14|      26|      37|     861|     889|       2
---------------------------------------------------------------------------
  861-  889 (40.44/29.87)	GDYFLVGPkrlKLTEHDKLLNKFLGTGEL
  900-  925 (42.70/24.30)	GNVFAVME...ELVSRRKLLKKYVSNLDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.33|      15|      37|     578|     593|       3
---------------------------------------------------------------------------
  578-  593 (22.17/14.70)	GGEEPSPgRSRIGTGN
  617-  631 (27.16/13.45)	GLQHPLP.VSQVGSNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.55|      20|      27|     351|     377|       4
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  351-  376 (29.36/37.26)	WESSLQHDVlhPifgnPTSSM.GGQPP
  381-  401 (34.19/16.84)	WQTKVELSI..P....PTNDFkNHQAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.18|      25|      33|     657|     681|       5
---------------------------------------------------------------------------
  657-  681 (47.85/35.44)	HMQNM...P..RPRGADAAGLLLCELELHP
  687-  716 (35.33/24.00)	HRRNMfggPwsDPDVLDSANDALKLVSLNP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.24|      34|      38|      50|      87|       6
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   50-   87 (56.56/39.60)	LNAIACPSETCARIPssTGNppFWI...PIHIV..IPERPTEC
   90-  128 (52.69/25.80)	FNVIADTDISVLSTP..VGG..FTMkdsPRDSVqfIEWSPTCC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.42|      14|      14|     424|     437|       7
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  424-  437 (27.27/19.18)	DFYPFDLPKVHIFS
  440-  453 (24.16/16.09)	NFAPVDNYQISVGS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.23|      21|      41|     144|     164|       8
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  144-  164 (40.85/22.18)	WTQPSQICFSCL....FVSDFLSIP
  182-  206 (34.37/17.56)	WQQDIAVVTKWLsgyrWLSSKPSAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.81|      19|      44|     730|     748|      10
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  730-  748 (35.65/19.38)	GANGLWPRKRRMSERDAAF
  777-  795 (39.17/21.98)	GLEGIWYKCMRCLQQTCAF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23659 with Med16 domain of Kingdom Viridiplantae
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