<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23648

Description Pre-mRNA-processing protein 40A isoform B
SequenceMANNSQPSSMQFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTPRPMQPGHPVPSSQAIPMQYIQTNRPLTSIPTHSQQTVPPFSNHMPGLAVSVAAPHSSYFTLSYGQQQDNANALAQYQHPPQMFASPAGQSWPSSASQSVAAVTSVQSAGVQSSGAASTDTVTNATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSEGRKYYYNKVTQQSTWSIPEELKLAREQAQKAANQGMQSETNDTSNAAVSSTATPTPTPTAVNAASLNTSLTSNHSNGLASSPSSVTPIAATDSQQSVSGLSGSSVSHSIVTPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQSKMPPLVENQASQDFASVNGSSLQDIEEAKRSLPVVGKNNVVPPEEKTNDDETLVYANKLEAKLAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERLRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKANSHWRKIQDRLEDDDRYLRLEKIDCLLVFQDYIRDLEKEEEEQKRIQKDQIRRGERKNRDAFRKLLEEHVAAGILTAKTQWHEYCLKVRDLPQYQAVASNTSGSTPKDLFEDAAEDLEKQYHEDKTLIKDTIKSGKITVVTTSVFEEFKVAVLEEAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITASSKWEDCKSLFEEAQEYRYIYYFLFYLPGAIVLSTVSP
Length848
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.08
Grand average of hydropathy-0.733
Instability index54.22
Isoelectric point5.64
Molecular weight95455.23
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23648
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.17|      36|      38|     198|     234|       1
---------------------------------------------------------------------------
  198-  234 (68.74/53.47)	WQEHTSaDGRRYYYNKRTRQSSWEKPLELMSPIERAD
  239-  274 (70.43/50.01)	WKEFTS.EGRKYYYNKVTQQSTWSIPEELKLAREQAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     431.55|      64|      66|     467|     530|       2
---------------------------------------------------------------------------
  413-  463 (40.25/23.36)	............LQDIEEAKR..SL..PVVGknnvvppE.EKTNDDETLVYANKLE.................AKLAFKALLES...V
  467-  530 (99.40/69.29)	SDWT....WEQAMREIINDKRYNAL..KTLG.......E.RKQAFNEYLGQRKKLEAEERRMK.......QKRAREEFTKMLEE...C
  535-  598 (91.96/63.51)	SSMR....WSKAISMFENDERFNAV..ERLR.......D.REDLFESYMVELERKEKENAAEE.......HRRNIAEYRKFLES...C
  603-  675 (79.14/53.56)	ANSH....WRKIQDRLEDDDRYLRL..EKI........D.CLLVFQDYIRDLEKEEEEQKRIQkdqirrgERKNRDAFRKLLEEhvaA
  676-  740 (56.34/35.85)	GILTaktqWHEYCLKVRDLPQYQAVasNTSG.......StPKDLFEDAAEDLEKQYHEDKTLI.......KDTIKS..GKI.......
  744-  802 (64.46/42.15)	TTSV....FEEFKVAVLEEAACQTI..SEI........N.LKLIFEELL.ERAKEKEEKEAKK.......RQRLADDFTNLL......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     151.37|      28|      30|       7|      34|       3
---------------------------------------------------------------------------
    7-   34 (57.79/31.97)	PSS....MQFRPVIQAQQGQPFVPMNSQQFGP
   40-   65 (51.47/27.73)	PSS....NAGMPVIQGQQLQYSQPM..QQLTP
   75-  103 (42.11/21.46)	PSSqaipMQY...IQTNRPLTSIPTHSQQTVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     151.38|      35|      37|     322|     357|       4
---------------------------------------------------------------------------
  155-  187 (31.78/13.21)	...SWPSS.ASqSVAAVTSVQS.AGVQSSgAASTDTVT.
  276-  299 (28.72/11.24)	..............AANQGMQSETNDTSN.AAVSSTATP
  322-  357 (54.22/31.72)	GLaSSPSS.VT.PIAATDSQQSVSGLSGS.SVSHSIVTP
  361-  388 (36.66/16.61)	GV..EPSTvVT.TSAAPTIVAGSSGLAEN.S.......P
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23648 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MANNSQPSSMQFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTPRPMQPGHPVPSSQAIPMQYIQTNRPLTSIPTHSQQTVPPFSNHMPGL
2) SIPEELKLAREQAQKAANQGMQSETNDTSNAAVSSTATPTPTPTAVNAASLNTSLTSNHSNGLASSPSSVTPIAATDSQQSVSGLSGSSVSHSIVTPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQSKMPPLVENQASQDF
3) VTSVQSAGVQSSGAASTDTVTNATNQQSLSDWQEHTSADGRRYYYNKRT
1
261
167
112
405
215










Molecular Recognition Features






MoRF SequenceStartStop




NANANA