<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23647

Description Pre-mRNA-processing protein 40A isoform A
SequenceMANNSQPSSMQFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTPRPMQPGHPVPSSQAIPMQYIQTNRPLTSIPTHSQQTVPPFSNHMPGLAVSVAAPHSSYFTLSYGQQQDNANALAQYQHPPQMFASPAGQSWPSSASQSVAAVTSVQSAGVQSSGAASTDTVTNATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSEGRKYYYNKVTQQSTWSIPEELKLAREQAQKAANQGMQSETNDTSNAAVSSTATPTPTPTAVNAASLNTSLTSNHSNGLASSPSSVTPIAATDSQQSVSGLSGSSVSHSIVTPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQSKMPPLVENQASQDFASVNGSSLQDIEEAKRSLPVVGKNNVVPPEEKTNDDETLVYANKLEAKLAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERLRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKANSHWRKIQDRLEDDDRYLRLEKIDCLLVFQDYIRDLEKEEEEQKRIQKDQIRRGERKNRDAFRKLLEEHVAAGILTAKTQWHEYCLKVRDLPQYQAVASNTSGSTPKDLFEDAAEDLEKQYHEDKTLIKDTIKSGKITVVTTSVFEEFKVAVLEEAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITASSKWEDCKSLFEEAQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKDKSKERHRKDETDSDNQDMTDGHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKQADSPESDNENRHRRHKREHWDGSRKTGGHEELEDGELGDDVEN
Length1008
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.111
Instability index56.26
Isoelectric point6.00
Molecular weight115122.00
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23647
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     240.62|      38|      38|     850|     887|       1
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  549-  609 (33.89/14.12)	DERF..NAVE.............RLRDREDlfesymvELERKEKENAaEEH..RRniaeyrkflescdyvKANSHWRK
  612-  664 (37.68/16.58)	DRLE..DDDRylrlekidcllvfQDYIRDL.......EKEEEEQKRI.QKDqiRR...............GERKNRDA
  850-  883 (44.13/20.76)	......KAKE.............KERKREE.......EKAKKEKERE.EKE..KR...............KEKEKKEK
  884-  922 (50.92/25.16)	DRER.eKDKS.............KERHRKD.......ETDSDNQDMT.DGH..GY...............KEEKKKEK
  923-  960 (38.02/16.80)	DKERkhRKRH.............QSSIDDV.......DSEKEEKEES.KKS..RR...............HGSERK..
  961-  987 (35.99/15.48)	.......................KSRKQAD.......S...PESDNE.NRH..RR...............HKREHWDG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.17|      36|      38|     198|     234|       2
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  198-  234 (68.74/45.55)	WQEHTSaDGRRYYYNKRTRQSSWEKPLELMSPIERAD
  239-  274 (70.43/42.57)	WKEFTS.EGRKYYYNKVTQQSTWSIPEELKLAREQAQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     176.01|      28|      30|       7|      34|       3
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    7-   34 (57.01/28.32)	PSSMQFRP...............VIQAQQ.......GQPF..VPMNSQQF.G..P
   40-   65 (51.72/25.14)	PSSNAGMP...............VIQGQQ.......LQYS..QPM..QQL.T..P
   75-  103 (37.49/16.57)	PSS.QAIP...............MQYIQT.......NRPLtsIPTHSQQ...tvP
  104-  151 (29.78/11.94)	PFS.NHMPglavsvaaphssyftLSYGQQqdnanalAQYQ..HP..PQMFaS..P
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     142.81|      28|      28|     283|     310|       4
---------------------------------------------------------------------------
  168-  194 (30.90/14.01)	..TSVQSAGVQS.SGAASTDT...VTnATNQQS
  283-  310 (46.42/24.25)	SETNDTSNAAVS.STATPTPT...PT.AVNAAS
  314-  341 (43.68/22.45)	SLTSNHSNGLAS.SPSSVTPI...AA.TDSQQS
  343-  371 (21.80/ 7.99)	...SGLSGSSVShSIVTPSTTgvePS.TVVTTS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.33|      10|      38|     451|     460|       5
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  451-  460 (14.97/ 6.40)	EAKLAFKALL
  492-  501 (16.35/ 7.57)	ERKQAFNEYL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.49|      10|      17|     818|     827|       6
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  818-  827 (19.05/10.51)	KSLFEEAQEY
  837-  846 (14.44/ 6.09)	REIFEEYITY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      26.92|       9|      24|     747|     759|       7
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  747-  759 (10.87/17.58)	VFEEFkvavLEEA
  772-  780 (16.05/10.25)	IFEEL....LERA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.80|      23|      29|     377|     400|       8
---------------------------------------------------------------------------
  377-  400 (35.05/28.60)	VAGSSgLAENSPQQSKMPPLVENQ
  408-  430 (37.75/25.14)	VNGSS.LQDIEEAKRSLPVVGKNN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.04|      32|     273|     508|     539|      11
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  508-  539 (57.42/34.05)	EAEERRMKQK.RAREEFTKMLEECKELTSSMRW
  782-  814 (50.62/29.19)	EKEEKEAKKRqRLADDFTNLLYTFKDITASSKW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23647 with Med35 domain of Kingdom Viridiplantae
Unable to open file!