<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23639

Description U-box domain-containing protein 34 isoform A
SequenceMSTPSRRSVAVAVSGGSKGSRRAVQWAADNLVPQADRFILVHVIPRITSIATPTGEYIPISEADADVFAASVLDAKLKSEQIFVPFKKLCDSNTMETVLLEDDNAAEALLSFISESGSQILVLGSDSSNFITRKLKGPGIPTTILRCAPDSCDVYIVARDRIISKLADFSSSRSHETSPRYFLSTKVNKEDNGIGREMSGISSSSTEPKILRNFRFLSISERSYIGLQSSSRRNSFENSTKNEEQNSENCGDDIETISLHSFDSIASAQREQLVMQEEVERLQLELQNTITMYKQVCEELVQAQNQALLLSSESLEETKIVNASLKREEILRKFAAEEKTKYLKVMKELEEAKNKFSKESYERQMAELDVLRESIERQRIVDTLLSNDRRYRKYTMDEIKLATNFFAEDLIIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPNMVLLLGACPESGCLVYEYMENGSLEDYLLKKNGKPPLPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNVLLDRNYVSKIADVGLAKLLVEVVPDNVTEYRESILAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIVTVEDAITNGSFRDILDPSAGDWPLDETVELAQVALKCTALRCRDRPEIDTEVLPMLQRFSDAANASARMGRNSVSAPSQYYCPILQEIMDDPYIAADGFTYEYVAIKAWLSKHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVTF
Length760
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-0.303
Instability index44.87
Isoelectric point5.61
Molecular weight85481.33
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23639
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.57|      26|      59|     313|     338|       1
---------------------------------------------------------------------------
  313-  338 (39.64/28.21)	ESLEETKIVNASLKREEILRKFAAEE
  373-  398 (40.93/29.38)	ESIERQRIVDTLLSNDRRYRKYTMDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     205.19|      51|      51|     130|     180|       2
---------------------------------------------------------------------------
   76-  119 (52.90/38.30)	....KL..KSEQIfvPFKKL.CDSNTMETVLLEDDNAAE.......ALLSFIS....ESGSQ
  130-  180 (84.98/66.76)	FITRKL..KGPGI..PTTILRCAPDSCDVYIVARDRIIS.......KLADFSSSRSHETSPR
  182-  241 (67.30/51.07)	FLSTKVnkEDNGI..GREMSGISSSSTEPKILRNFRFLSisersyiGLQSSSRRNSFENSTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.19|      23|     137|     475|     497|       4
---------------------------------------------------------------------------
  475-  497 (42.42/29.57)	VYEYMENGSLEDYLLKKNGKPPL
  615-  637 (42.77/29.88)	VEDAITNGSFRDILDPSAGDWPL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23639 with Med32 domain of Kingdom Viridiplantae
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